Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02047 ATGGATTCCTCTCTCTCTTTCCACACTCCAACTAACAATGCCATCTCACAACCGGAACAACCGCCGCCTCCACCGCCTCCGCCGCCGCCTCCTAACTCACATTCGCCACCCGCACTCTTAGTTCCCAAACCCGAACCCTTCTGGGCCTCTGACCATGACGATATCGGAGACGAACTCGACCTATTCACTGAGTTCAACCGAGTTACCGAGTTGTTCCACCTTGCCTTCGGACCCACCAATGTCGTCCTTCCCCCCTACTCCTTCGGACCTCAACCTGCTTCACCCACATGCTCCGACCCCCTTCCTGCTGCGGATGTCCATTCGGCGGTTCAGGAACACCCGAATTCGTTGTCCTCCACCAGCGACGCCTCGAGAGCGATCGTCCCCGTGGAGGACCTCACGGTGAGCGTTGCGCCGCCGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTTCGGGTAATGGGTCTGTCGGTGAGGGAACAGGCACAGCTGCGGGAGACGGTGAGGCGCACGCGCTTGGTGTACGACTCGGTGCGCGTGTATACCGCTGTGGAGGAGGAGAGGCGGGTGGCTGCCTTGGCGGCTGCGGCAGCGGCGAGGGAGGCGGCAAGGGAGGCGGAGATCAAGGAGGAGCAGGAAGAGGAGAAAGTGGTGGAGGGCCGGACTCGACGTCTCCGCGGGGACCTGCGAGCTGCTGGACTGATGCGGGAGCGTGGACTGTGGCTGAACCGGGAGAAGCGAATCGTTGGGGCGATCCCTGGGATTTTGGTGGGGGATTTGTTCCTTTTCAGGATGGAGTTGTGTGTGCTTGGGTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTGCAAGTATGAGCTCCAGTGGGGAGCCTATAGCCACCAGTGTGATTGTTTCTGGGGGTTACGAGGATGATTCTGATAAGGGTGAGCATATATTCTACACTGGTCATGGAGGGCAGGGGAAGAATTCGTCTAAGCAGGTTGCTGATCAGAAGTTGGAGTCAGGGAACCTTGCATTGGAAAGGAGTATGCATTACGGTGTGGAGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGCTTCTGGTAAGGTGTATGTGTATGATGGAGTGTATAAGATTACTCAGTGCTTGTTTGATAAGGGGAGGTCTGGTTTTGGGGTTTACAAGTTTAGGCTTTCCAGGGTTGAGGGGCAGGCTAAGATGGGAAGTGCTATTTTGAAGGAAGCTAGGAGTATTAGGAGGAATGAAATGGAATCGAATACTGTTCGTTGTCTTTCTGCTGATATGTCCAACAAGAAGGAGAATGTTCCTGTTCGACTTTTTAACGACATAGATGATGATCGAGATCCTCTTAACTATGAGTATCTTGCCAGGACAAGTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAATGTTACTGGTTGTGACTGTGTGAATGGTTGTGGTGATGGATGCTTTTGTGCTATGAAAAATGGGGGTGATTTTCCTTACACTCTGCAGGGACATCTTGTGAAAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCTTGTCCTTCTCAGTGTCGTAATCGTGTTTCGCAGAAGGGACTGAAATATAGATTGGAAGTGTTTAGGTCCCTGCAGACATCTTGGGGTGTTAGGTCTCTGGACCTTATTCAAGCCGGTACTTTTATATGCGAGTTTTCTGGGGTTGTTTTGACTAGGGAGCAGGCGCAACTCTTTGCAATGAATGGTGACTCTTCGATATATCCCAATAGGTTTTCAGAAAGATGGGCGGAATGGGGGGATTTGTCTCAAGTAGATCCAAAATATGTGCGTCCATCATATCCATCTATTCCTCCTTTAGATTTTTCTCTGGATGTGTCGACTATGAGGAATGTTGCTTGTTATATGAGCCATAGTTCATCTCCAAATGTTTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCACACCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTACGGCGTAGCTGATGAGTGGACAGGGAAGCTCTCTATATGTAACTGA 2088 0.5086 MDSSLSFHTPTNNAISQPEQPPPPPPPPPPPNSHSPPALLVPKPEPFWASDHDDIGDELDLFTEFNRVTELFHLAFGPTNVVLPPYSFGPQPASPTCSDPLPAADVHSAVQEHPNSLSSTSDASRAIVPVEDLTVSVAPPRKQSRQKELVRVMGLSVREQAQLRETVRRTRLVYDSVRVYTAVEEERRVAALAAAAAAREAAREAEIKEEQEEEKVVEGRTRRLRGDLRAAGLMRERGLWLNREKRIVGAIPGILVGDLFLFRMELCVLGLHGQIQAGIDYLPASMSSSGEPIATSVIVSGGYEDDSDKGEHIFYTGHGGQGKNSSKQVADQKLESGNLALERSMHYGVEVRVIRGMRYEGSASASGKVYVYDGVYKITQCLFDKGRSGFGVYKFRLSRVEGQAKMGSAILKEARSIRRNEMESNTVRCLSADMSNKKENVPVRLFNDIDDDRDPLNYEYLARTSFPQFVFHQSGNVTGCDCVNGCGDGCFCAMKNGGDFPYTLQGHLVKGKPLIFECGPFCSCPSQCRNRVSQKGLKYRLEVFRSLQTSWGVRSLDLIQAGTFICEFSGVVLTREQAQLFAMNGDSSIYPNRFSERWAEWGDLSQVDPKYVRPSYPSIPPLDFSLDVSTMRNVACYMSHSSSPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02047 695 Pfam SET domain 551 682 IPR001214 GO:0005515
Vian1g02047 695 SUPERFAMILY PUA domain-like 230 417 IPR015947 -
Vian1g02047 695 ProSiteProfiles SET domain profile. 539 682 IPR001214 GO:0005515
Vian1g02047 695 MobiDBLite consensus disorder prediction 1 15 - -
Vian1g02047 695 SUPERFAMILY Formin homology 2 domain (FH2 domain) 21 31 - -
Vian1g02047 695 ProSiteProfiles Pre-SET domain profile. 478 536 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian1g02047 695 SMART preset_2 431 523 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian1g02047 695 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 66 695 IPR025794 GO:0016571
Vian1g02047 695 Pfam SAD/SRA domain 248 403 IPR003105 -
Vian1g02047 695 MobiDBLite consensus disorder prediction 1 51 - -
Vian1g02047 695 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 110 683 - -
Vian1g02047 695 SMART G9a_1 244 403 IPR003105 -
Vian1g02047 695 SMART set_7 539 688 IPR001214 GO:0005515
Vian1g02047 695 Pfam Pre-SET motif 434 531 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian1g02047 695 MobiDBLite consensus disorder prediction 16 43 - -
Vian1g02047 695 Gene3D - 246 407 IPR036987 -
Vian1g02047 695 Coils Coil 194 215 - -
Vian1g02047 695 Gene3D SET domain 408 695 IPR046341 -
Vian1g02047 695 ProSiteProfiles YDG domain profile. 249 399 IPR003105 -
Vian1g02047 695 SUPERFAMILY SET domain 440 693 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02047 Vian-Chr1 24645055 24647142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02047 122 684 Su(var)3-9 homologs AT5G04940 37.651 6.47e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian1g02047 SAD_SRA 1.1e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02047 K11420 - gmx:100785015 967.222