Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02040 ATGGTTGATCTAAACCAAGAAACAAAGATGTTTAGCTTGAGCACTTTCCGTTGCAAGGTGACTTTTTGCGATGATTTTAGTTTTATGCACAAAGGTGCAATGCGTAAACCTAGTTTATCTAAGAGGTTTTACAAGATCAGTGTGGAACATCATAGTTTGGCATGGCAGTTGAGTTGGGAGTCTTGGAACATTGGTTTCGCATCTGCTACACCTGTAAGTAGTAGTGCACCTCCTTCACCTTCTAGGACAAGTCCTTTAGATTCTCACTCTACTCCATCACACACTTTTGCATTGGCTCCACCACCTCCATCAGCAAAAGATTCTGGCCAACGAAGCAGTGGTGGCACTAGTGCAGTGGCTTTTGTTGGTGTAGTGACAGCAATTGTATTGTTTGGGTTCATTGGCATTGCTATCTGGTGCCTGAGGAGGCAAAAGAAAAGGATTTCTAAGACTGGTGGTTATGACTTCCCATCCCCTCTTGGCTTAACATCTGAGTCAGATTTGTCCTTTCTTAAGACCCGTTCTTCAGCTCATCGTTTGCAAAGAGCTTCTGGCGGTAATGCAGCATCAGGACTGGGAAACTCAAGATCATTCTTTGCATATGAAGAACTAATGAAGGCCACAAACAATTTTTCAACTCAAAATCTTTTGGGGGAAGGTATGCCAGTGCTGGAGTGGACAAACCGTGTTAAAATTGCGGCTGGAGCAGCCAAAGGAATAGCTTATCTCCATGCAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCAGCAAACATTCTTTTAGACTACAACTTTGAAGCTCGAGTCTCAGATTTTGGGCTGGCCAGATTAGCAGTTGATGCAAATTCACATGCTCGACCCTTGCTAAATGATGCACTTGAGAGTGAGGAATTTGAGATTTTGACAGATCCAAAGCTAGGAAAAAAGTACGTTGAAAGTGAAATGGTTTGCATGATTGAAGTTGCTGCTGCTTGCGTGAGACATTCATCTGCCAGAAGACCTCGGATGGGACAGGTTGTTAGAGCTTTTGATGGTTTAGCTATGTGTGATCTTTCAAATGGAATGAGAGTTGGGGATTCTACGCAGCAATCCGCAGAAATAAGATTATTACGTAGAATGGCATTTGGTTACAATTCAGAATTTTTTAGCCACTCAAGTTTGAATGAGTAA 1176 0.4252 MVDLNQETKMFSLSTFRCKVTFCDDFSFMHKGAMRKPSLSKRFYKISVEHHSLAWQLSWESWNIGFASATPVSSSAPPSPSRTSPLDSHSTPSHTFALAPPPPSAKDSGQRSSGGTSAVAFVGVVTAIVLFGFIGIAIWCLRRQKKRISKTGGYDFPSPLGLTSESDLSFLKTRSSAHRLQRASGGNAASGLGNSRSFFAYEELMKATNNFSTQNLLGEGMPVLEWTNRVKIAAGAAKGIAYLHADCNPRIIHRDIKSANILLDYNFEARVSDFGLARLAVDANSHARPLLNDALESEEFEILTDPKLGKKYVESEMVCMIEVAAACVRHSSARRPRMGQVVRAFDGLAMCDLSNGMRVGDSTQQSAEIRLLRRMAFGYNSEFFSHSSLNE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02040 391 MobiDBLite consensus disorder prediction 72 112 - -
Vian1g02040 391 Pfam Protein kinase domain 213 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02040 391 SMART tyrkin_6 120 345 IPR020635 GO:0004713|GO:0006468
Vian1g02040 391 Gene3D Transferase(Phosphotransferase) domain 1 286 355 - -
Vian1g02040 391 Gene3D Transferase(Phosphotransferase) domain 1 211 285 - -
Vian1g02040 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vian1g02040 391 MobiDBLite consensus disorder prediction 72 95 - -
Vian1g02040 391 FunFam Os07g0541700 protein 212 291 - -
Vian1g02040 391 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 287 375 IPR047117 -
Vian1g02040 391 ProSiteProfiles Protein kinase domain profile. 105 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02040 391 SUPERFAMILY Protein kinase-like (PK-like) 223 343 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02040 Vian-Chr1 24577090 24580816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02040 209 388 Trihelix Transcription Factor Family AT5G38560 43.307 1.20e-49 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vian1g02040 Pkinase 3.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02040 - - gmx:100794393 221.476