Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02035 ATGGAAAATGCTAATGGTCCTAAGAGCAACAAGCTTCAAGGAAATTCTGATGAGGAAATATTTCAAGTGAACGAAGAGGTGGAGGTGCGGCGTGTAGAGGAGGGGTTCCTAGGATCATGGCACCCTGGGATAGTTATCAAGTGTGGAAAGGTGAAGTGCTTTGTCAGATACAAGAATGTTCTAAAAAGTGACGGTTCGGATTATCTTGTGACTGCAGTGAGGGTTTCAAAAGCATCGGAATCTTCAAAGTATAGCATGCGGGGGTTCATTCGACCACCGCCACCTTGGATTGAGTTTGAGAGATTTAACCTTAACTATGGTTTGTGCGTGGATGTAAACTGTCAGGGAGCTTGGTGGGAAGGAGTGATATTTGATCAGTGCGATGGGATGCTGAAAAGGAGCGTGTTTTTTCCAGATTTGGGTGATGAAATGCAGATTGAAATTCATCAACTGCGGATTACTCAGGACTGGAATGAAGTTACACGACAATGGGAACTAAGAGGAAACTGGGTGTTTCTTGAATTGCTGGAGGAGTATCATCAGAATGAATCATTTGTTGGAGTTTCAGCTAAACAAATGTGGTATGATGTACTGGTACAAAAGAGATTTGGCATGAGGGGAGAGTGGGCATATAATGAGAAAGAATTGTACAGGGAAGCGGTGCTAGGTGTAGTTGATGACTACTTAAGTCTTAGAGTGAACAAAGTTTTCTCAGTTTTAGACTTCCCACCAGAGCAGGAATCAGTTGAACCAATGGCTAATATTGACTTGAACATGGCCTTGTCTGATAGAGATAATTTTGTCCAGAAAGAACCTGCTCCTCTTGTTCAAGAGGTTTTACCTGAGTTTGAAATAGAAATTGACCTTGAAGCTGCTCCTGAAGTAGTTTCTGGTGAGAGATGTGAAAGCTCATCAAGGGATTCAAAGGCCAAAATATCTGAGAGTCAAAGCAATAGATTGCCTCCACAAGGATCAGGGAAGAGGGTGACAAAGGCGTCTGCCTCTAGTCTTTTACCTCTGGATAAACCTCTAACTATTTTGTCTTGGTTGATGGACAACAAGATGGTGTTTCCAAGATCTACCGTATATTATTACAATGAAAAAGCATGGCACCATGCAGTTTCGAGTTGGACTAGAGGGAAAGTAACTCGCAGTGGAATCAAGTGTTACTGTTGTAACATAGTTTACAGTTTTGTTGGCTTTGAAAATCATGCTAGTGGAGTCAATACCTGCACACCATCTGCTTGTATTTTTTTGAAAGATGGTAAATCACTCTTAGAATGCCAAATGGAAATAATGCAAAATCGGGTGACAGGAGAAACTAGCGAAAAACCATGCCTTAATTTCCCTCTAGAAGAGAATGACTTGATTTGTTCGCTTTGCCTCTATGGCGGTGAACTTATTTTATGTGATCAATGTCCATCTTCATTTCACATGACGTGTCTTGGGTTGGAGCATATCCCTGATGGTCAATGGCTTTGCCCACAATGCCGTTGCGGTATTTGTCGCCAAAGCAAACTAGACGAAGATGAGGATGGCCATGCTGCCCTTACTTGCGTACAGTGTGAACATAAATTCCATGTTAGGTGCCTGGAAAATGGAGGCATAGATTTATCAAGATGTTCAGAAAACTGGTTCTGTGGAAAAAGCTGCGAAAAGATACACAATGGCCTTCATGATCTATTAGGAAAGCCAGTTTTAGTGGGTGTGGACAATCTAACATGGACATTGGTGAAGTTTATTGAGCCTGAGTGTGATGATGTTGGTAGAATAAGACATGACAACTCAGTAGCAGAAAGTTACAGCAAACTCAATCTTGCTCTTGCGGTGATGCATGAATGTTTTGAGTCCCTAAAACAAAGTTTATCTAGCAGAGATATCATTGAAGATGTTATATTCGGCAGAAGGTCAGAGCTAAGGCGATTAAATTTCCAGGGTTTCTATACCGTACTACTTGAGAGAAATGAAGAAGTGGTTTCTGTGGCAACTGTTAGGGTCCACGGGGAGAAGGTGGCAGAAGTACCTTTTGTTGGTACAAGATTACAGTACCGTCGACATGGATTTTGTCGCATTCTGATGAGTGGTCTTGAACAGTTGCTCATGCAAATAGGTGTGGGGAGGCTTGTTTTGCCGGCTGTTCCTAGTACGCTGAAGACATGGACTGACTCTTTTGGTTTTGCAAAGATGACCGTTTCTGAGAGGTCTAAATTTCTGGACAACACCTTCTTAAATTTTGAGGGTAGCATCATGTGCCATAAGCTGTTGATGACGATTCCAGCTCCATATTCTGGCTTGTTAATACCTAATTTTGAGAAGTCACAATCCAGATGTCATGTTTTACCTGAAAATACCGTTGACCTCAATCAGTCTATTTCAGTATCAGAAGGAGGGATGATATATCACCAAACGGGGAATACTTGTGCAGGCAACAACAATGGCGACAACAATGATTTTGTCAATTGTGTTACTGTTCCAATCAACAACATGGAGAAAGAAGTTCCTAGTGATCAACAGTATCTTAATGGAAGCAGCTCACAGTTCTTTCATGAAAAAGAAGGTGAAGAATACAACAGTGAGTATACTGGAAAAAAAGTAAGGTATCTGCATAAGGGGAGCTTCTGA 2622 0.4157 MENANGPKSNKLQGNSDEEIFQVNEEVEVRRVEEGFLGSWHPGIVIKCGKVKCFVRYKNVLKSDGSDYLVTAVRVSKASESSKYSMRGFIRPPPPWIEFERFNLNYGLCVDVNCQGAWWEGVIFDQCDGMLKRSVFFPDLGDEMQIEIHQLRITQDWNEVTRQWELRGNWVFLELLEEYHQNESFVGVSAKQMWYDVLVQKRFGMRGEWAYNEKELYREAVLGVVDDYLSLRVNKVFSVLDFPPEQESVEPMANIDLNMALSDRDNFVQKEPAPLVQEVLPEFEIEIDLEAAPEVVSGERCESSSRDSKAKISESQSNRLPPQGSGKRVTKASASSLLPLDKPLTILSWLMDNKMVFPRSTVYYYNEKAWHHAVSSWTRGKVTRSGIKCYCCNIVYSFVGFENHASGVNTCTPSACIFLKDGKSLLECQMEIMQNRVTGETSEKPCLNFPLEENDLICSLCLYGGELILCDQCPSSFHMTCLGLEHIPDGQWLCPQCRCGICRQSKLDEDEDGHAALTCVQCEHKFHVRCLENGGIDLSRCSENWFCGKSCEKIHNGLHDLLGKPVLVGVDNLTWTLVKFIEPECDDVGRIRHDNSVAESYSKLNLALAVMHECFESLKQSLSSRDIIEDVIFGRRSELRRLNFQGFYTVLLERNEEVVSVATVRVHGEKVAEVPFVGTRLQYRRHGFCRILMSGLEQLLMQIGVGRLVLPAVPSTLKTWTDSFGFAKMTVSERSKFLDNTFLNFEGSIMCHKLLMTIPAPYSGLLIPNFEKSQSRCHVLPENTVDLNQSISVSEGGMIYHQTGNTCAGNNNGDNNDFVNCVTVPINNMEKEVPSDQQYLNGSSSQFFHEKEGEEYNSEYTGKKVRYLHKGSF 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02035 873 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 589 761 IPR000182 GO:0016747
Vian1g02035 873 Pfam Agenet domain 25 95 IPR008395 -
Vian1g02035 873 PANTHER PHD FINGER PROTEIN 12 248 836 IPR042163 GO:0003714|GO:0045892
Vian1g02035 873 Gene3D - 573 730 - -
Vian1g02035 873 MobiDBLite consensus disorder prediction 314 332 - -
Vian1g02035 873 Pfam PHD-finger 457 499 IPR019787 -
Vian1g02035 873 Pfam Tify domain binding domain 380 431 IPR032308 -
Vian1g02035 873 SUPERFAMILY FYVE/PHD zinc finger 443 498 IPR011011 -
Vian1g02035 873 MobiDBLite consensus disorder prediction 296 332 - -
Vian1g02035 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 499 IPR013083 -
Vian1g02035 873 ProSiteProfiles Zinc finger PHD-type profile. 455 500 IPR019787 -
Vian1g02035 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 554 IPR013083 -
Vian1g02035 873 SMART agenet_At_2 19 98 IPR014002 -
Vian1g02035 873 SMART agenet_At_2 102 159 IPR014002 -
Vian1g02035 873 CDD NAT_SF 650 710 - -
Vian1g02035 873 SMART PHD_3 457 498 IPR001965 -
Vian1g02035 873 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 609 728 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02035 Vian-Chr1 24432141 24441676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02035 318 700 PHD Transcription Factor Family AT5G58610 46.717 5.48e-104 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian1g02035 Agenet 1.7e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02035 - - var:108323857 1774.99