Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02034 ATGGGAAGGGGTAGGGTTCAGCTCAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACCTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGTGACGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTATGCCTATGCTGAGAGACAACTTGGAAATTGGACCATTGAGTACACCAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCATAGGCACTATATGGGAGAAGATTTAGGTTCAATGAGCCTAAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAACAAATTCGTACACGCAGAAACCAACTCATGTACGAGTCGATTTCTGAGCTTCAGAAGAAGGAGAAAGTGATACAGGAGCAGAATAACATGCTTGCAAAGAAGATAAAGGAGAAAGAAAAGGTTGCAGCACAGCAGGCACAATGGGACCATCCAAACCATGGAGTTAATGCATCTTTCTTGCTACCTCAGCCACTTCTGAACATGGGTGGCAATTATCGTGAGGAAGCACCAGAAGTAGGAAGGAATGAACTTGACCTCACTCTGGAACCCTTGTATTCCTGCCACCTTGGATGCTTTTGA 687 0.4512 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKVAAQQAQWDHPNHGVNASFLLPQPLLNMGGNYREEAPEVGRNELDLTLEPLYSCHLGCF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02034 228 Coils Coil 114 137 - -
Vian1g02034 228 ProSiteProfiles K-box domain profile. 80 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g02034 228 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vian1g02034 228 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vian1g02034 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g02034 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g02034 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian1g02034 228 Coils Coil 80 100 - -
Vian1g02034 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Vian1g02034 228 FunFam Floral homeotic protein APETALA 1 13 68 - -
Vian1g02034 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian1g02034 228 Pfam K-box region 79 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g02034 228 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vian1g02034 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g02034 228 Coils Coil 143 173 - -
Vian1g02034 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian1g02034 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02034 Vian-Chr1 24417685 24423215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02034 1 228 MADS-box Gene Family AT1G26310 62.598 5.43e-104 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian1g02034 K-box 3.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02034 K09264 - gmx:100810129 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02034 1 24417685 24423215 Vian4g00589 4 7057016 7064323 PCT