Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02027 ATGGAGTCTGACAAGAACGAACGTGAGACGAGTCGCGAGGTTTGCGCGAATGGAAATAGCATCAATGCGGCAGAACTTGAGGCCAAACTTGATGCAGGAAATGTTCAAGAAGCAGAAACAACATTGCGTGATGGGTTGTCACTAAGTTCCGAGGAAGCAAAGGCTGTTCTTGGAAAATTAGAGTATCAAAGAGGTAACGTGAAAAATGCTCTTCAAGTGTTTGATGGAATTGATCTTCAACCAATCATACAACAATTACAAACTTCCCTTTCGGAAAAAGGACCAGTGAAGAATGCTTTGTTGTTTGAAGTCGTCTACCTAAGAATCAAGTCTCTACAAAAGTTGGACAAATGTACTGAAGCTATTGATGAGTGTAAGTGTGTTCTTGATGCTGTTGAGAAGACATATGGTCAGGGTACATTTGATACACAAGTCGACAATAAATCGCAGGAGATAGCCAGTCGTGTAGTGGAGCTCCTTCCAGAGCTTTGGAAACAGGTTGGTCGTTATGATGAGGCATTGTCTGCTTATAGGAATGCCCTACTTAGCCAATGGAACCTTGATAATGAATTTGTTGCAAGAATTCAGAAGGCACTTGCTGTGTTTTTGTTGTACAGCGAAGTGGAGGCAAGTCCACCTAACAAGACGGATGGGTCTTATGTACCCAAAAGCAATCTGGAAGAGGCAATTCTTCTTTTAATGATTATTTTGAGAAACTTCATCCTTGGTAAGATAAAGTGGGACCCTTCAGTTATGGAACACCTGACTTTCACACTTTCAACATGTGGACAAACCTCTATTTTAGCAAAGCAATTTGAAGAGTTGATACCTGGTGTATACCACCGCATTGATCGTTGGAATTTTATAGCCATGTGTAATTGTATAGCTGGAGAAAATAAAAGTGCTTTGAATCTACTTAGGATGTCTTTGCATAAACATGAACGACCAAATGACCTAATAGCATTATTATTGGCTGCCAAAGTTTGTAGTGAGGATCCTCATCTTGGTGCTGAGGGAGTAGGTTATGCACAAAGAGTAATCAATAATGCCCGAGGATTAGATGAGCATTTGAAAGGTGTGGGTCTTAGGATGTTGGGACTTTGCCTAGGAAAACAGGCTAGGGTTTGTTCTTCTGACCATGAGAGGTCTAACCTTCAATCCAAAGCTCTACAATCATTAGAGAAGGCAATTAGATTGGAGCAAAACAATGCTGATCTCATTTTTGAATTGGCTATTCAATATGCTATGCACCGAAATTTAACTGTTGCTTTATCTTGCGCTAAACAGTTCTTTGACAAAACTGGTGGCTCTACATTGAAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTGCACAAAAAAGATTTGCAGAGGCCGAAGTAGTCACTGATGCAGCTGTAGACGAGACTGCAAAATGGGAGCAGGGGCCATTACTCAGGCTGAAAGCCAAGTTGAAGATCTCCCAATTACGACCCATGGATGCAATTGAAATTTATCGGTACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCACCTGGGCCACCTAAACAAGGTTCACAGGTTGAAGATGATACGATAAACGAACTTGAAGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAGGATGCCGAAATTTGTTTGCAAAAGGCGAAAGAGTTAAAGGAATACTCACCAGCAACAACACACGCTGAAGGCAAGAACAAATCTTTATCTATTATGTTCGAAGGTCGTGGAGAATATTTAGAAGCTCTCATTGCTACTTTGAATGCGGTTCTGCTTGAACCAAACTATGTGCCAAGCAAGATCTTGATGGCTTCTTTGATACTGAAAATCGATTTTATTTCTGCTGCACCTGTTGCTAGATGCCTACTTTGTGATGCACTTAGAATAGAACCCACCAACCGCATGGCTTGGTATTACTTGGGATTAACTCACAAGGCTGATGGCCGAATATCTGATGCTGCTGATTGCTTCCAAGCAGCTTCCTTGCTTGAAGAATCTGATCCCATTGAAGGTTTCAGCTCTATGATTTGA 2049 0.4134 MESDKNERETSREVCANGNSINAAELEAKLDAGNVQEAETTLRDGLSLSSEEAKAVLGKLEYQRGNVKNALQVFDGIDLQPIIQQLQTSLSEKGPVKNALLFEVVYLRIKSLQKLDKCTEAIDECKCVLDAVEKTYGQGTFDTQVDNKSQEIASRVVELLPELWKQVGRYDEALSAYRNALLSQWNLDNEFVARIQKALAVFLLYSEVEASPPNKTDGSYVPKSNLEEAILLLMIILRNFILGKIKWDPSVMEHLTFTLSTCGQTSILAKQFEELIPGVYHRIDRWNFIAMCNCIAGENKSALNLLRMSLHKHERPNDLIALLLAAKVCSEDPHLGAEGVGYAQRVINNARGLDEHLKGVGLRMLGLCLGKQARVCSSDHERSNLQSKALQSLEKAIRLEQNNADLIFELAIQYAMHRNLTVALSCAKQFFDKTGGSTLKGWRLLALVLSAQKRFAEAEVVTDAAVDETAKWEQGPLLRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSPGPPKQGSQVEDDTINELEVWHGLANLYASLSHWKDAEICLQKAKELKEYSPATTHAEGKNKSLSIMFEGRGEYLEALIATLNAVLLEPNYVPSKILMASLILKIDFISAAPVARCLLCDALRIEPTNRMAWYYLGLTHKADGRISDAADCFQAASLLEESDPIEGFSSMI 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02027 682 Gene3D Tetratricopeptide repeat domain 262 464 IPR011990 GO:0005515
Vian1g02027 682 Gene3D Tetratricopeptide repeat domain 20 188 IPR011990 GO:0005515
Vian1g02027 682 PANTHER PROTEIN NPG1 5 679 IPR043376 -
Vian1g02027 682 SUPERFAMILY TPR-like 164 424 IPR011990 GO:0005515
Vian1g02027 682 SUPERFAMILY TPR-like 387 670 IPR011990 GO:0005515
Vian1g02027 682 Gene3D Tetratricopeptide repeat domain 465 675 IPR011990 GO:0005515
Vian1g02027 682 SMART tpr_5 102 135 IPR019734 GO:0005515
Vian1g02027 682 SMART tpr_5 439 472 IPR019734 GO:0005515
Vian1g02027 682 SMART tpr_5 529 562 IPR019734 GO:0005515
Vian1g02027 682 SMART tpr_5 640 673 IPR019734 GO:0005515
Vian1g02027 682 SMART tpr_5 283 316 IPR019734 GO:0005515
Vian1g02027 682 SUPERFAMILY TPR-like 478 615 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02027 Vian-Chr1 24322789 24331518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02027 3 682 Calmodulin-binding Proteins AT2G43040 63.053 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02027 K21843 - gmx:100811897 1044.65