Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02020 ATGGAGAAATCAAGGTCTTCAGACCAAGTCGTTCTCTTCATCGACCAACATAATCCTAAACCATCATCCATGGAAGCAGAAAATCATCAAGAAAAACCCAGACACCCCATAAAAGTAAAAACCCTTAACCGTCTCAACTTCTCAAAACCCAAATCCCGAATCCAAGAGTACAACTATGTTCCCCGGAACAAGCTTGCAGCCTCTAAAGAAGAAGAAGATGACATTATCCAACCCACCTTCAAGCTCACTTCCAACGAAGAAGACGACGACGAAGATGACTGGAAATGGGACAAGGAAGAGATGGAAGAGGATGGCTCAGAGCATAGCACAAAATTGCACCAGAAGAAGAAGTTCAGAGTCAAGTGGAGGCTCCTGATGGAGTGGGCTTTGTTCCTCAATATATTGTCATCCTTGGAAGAGCATAAGAAACTGTTTGTGGCTAGGCCTTGTGTTACTCTCCTACTGGAGCCTGGTATTCGACGATGTCCAGAAGAAGAACCACAAGTTTCTGAACAAGATGTTTCAGGCGTTGGTGGCAGTTCTGGTGGGCGCAACCATTTGGCTGGTGAAGATCGTGCTGGTGAAGATGCTGGCTTCTTCGTTCCACGTGACCACAATGAAGGAGAGTGTTTTCCACCACTACATTTTGGATACTTTGTCGGGTCCGCCGATGCAAGACGCGGAGGAGATATTGCGGCAGCACCACCTGACGGGGTCGAAGTCGATGCCTGCGAGGATGAAGATGAAGGAGGCGAAGAACTTGTACAAGTCGAAGAGATTTGGGTCGAGGAAGATCGACATGGAGAAGCTGAGAGAGCTCAGCATGGAGAGCCCTTCGTCTGCATGGAAACTGTGGATGATTTTGGCAATGCCGAGTCTGAGATCAATAGTGAGTGGGAAGCTAGAAACTGTGCTCAGAGGATTTTCAAGAACGTTGCCAAGCCTGATGCCAAGTATATTGAAGAAGATGATCTGATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACAGGACAGATAAGCAGGTCTTCATTCAGAAATTGGGTGATGATCGTAGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAACGAGAAAATTTACTACCCTAATGCAGTTTTGCTCTCTAAGCCAATAAGCAACTTCTATAGGAGTCCAGATATGAGTGATGCAATTGATTTCACCATCGATGTTTCAACTTCCATGGAGACCATCCTTGCCCTCAAGAAATCAATACAGATGTACATTGAGAGCAAACCCAAGTATTGGAATCCAAAATACAGTTTGATAGCCAAAGGAATAGAGAATGTGGACAAGCTAAAGTTTGCGCTATGTGTGCAACACACTATCAACCATCAGAACTATGGTGAGAGAAACGTTAGGATAACTGAGCTTCTCTTGGAACTGAAGAGGATCTTTGAGATCCATGGAGATTCAGATCACCCATATGAATATTGA 1497 0.4442 MEKSRSSDQVVLFIDQHNPKPSSMEAENHQEKPRHPIKVKTLNRLNFSKPKSRIQEYNYVPRNKLAASKEEEDDIIQPTFKLTSNEEDDDEDDWKWDKEEMEEDGSEHSTKLHQKKKFRVKWRLLMEWALFLNILSSLEEHKKLFVARPCVTLLLEPGIRRCPEEEPQVSEQDVSGVGGSSGGRNHLAGEDRAGEDAGFFVPRDHNEGECFPPLHFGYFVGSADARRGGDIAAAPPDGVEVDACEDEDEGGEELVQVEEIWVEEDRHGEAERAQHGEPFVCMETVDDFGNAESEINSEWEARNCAQRIFKNVAKPDAKYIEEDDLMRFLKRVEIHTIFPLFEGALETGQISRSSFRNWVMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPDMSDAIDFTIDVSTSMETILALKKSIQMYIESKPKYWNPKYSLIAKGIENVDKLKFALCVQHTINHQNYGERNVRITELLLELKRIFEIHGDSDHPYEY 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02020 498 Gene3D - 349 395 IPR023408 -
Vian1g02020 498 MobiDBLite consensus disorder prediction 1 36 - -
Vian1g02020 498 Pfam Mechanosensitive ion channel 360 489 IPR006685 GO:0016020|GO:0055085
Vian1g02020 498 MobiDBLite consensus disorder prediction 164 191 - -
Vian1g02020 498 SUPERFAMILY Sm-like ribonucleoproteins 338 395 IPR010920 -
Vian1g02020 498 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 291 359 IPR016688 -
Vian1g02020 498 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02020 Vian-Chr1 24259745 24264504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02020 360 491 Mechanosensitive Ion Channel Family AT5G12080 53.383 5.96e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02020 K22048 - gmx:100808521 247.669