Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02009 ATGACAGAAAACTGCATAGCACTCAAACCAGACCACAGCAACAGTCACCCTCAGGAAGGACCCCCCAAGATCACGACTCAGACTGTCCTTCCCATACAAACAAACGACCAATCTTTTCTTAAACTAGCTATGTACCCCATAACTTTGAAGTTTGAAGAGTTGGTGTACAAAGTTAAACTGGAGCAGAAGGGTCTGTGTTGGGGGAGCACAAGGAGTTCCACAGAGAAGACCATACTGAAAGGAATCACTGGTATGGTTTGTCCGGGAGAAATAATGGCTATGTTGGGGCCATCTGGGAGTGGCAAAACCACACTTCTCACAGCCCTTGGAGGAAGGCTTAGTGGCAAACTATCTGGAAAGGTCACGTACAACAACCGGCCTTTTTCAGGAGCCATGAAAAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGTTATACCCCCATCTCACTGTGACCGAAACACTACTCTTCACTGCACTTCTCAGGCTTCCCAACATCTTGACCAAGGAAGAAAAAGCTCAGCATGTAGAGCATGTAATCAGTGAGCTAGGACTGAGCAGGTGCAGGGGTAGCATGATTGGAGGCCCTCTATTCAGAGGGATATCAGGAGGGGAGAGAAAAAGGGTGAGCATAGGCCAGGAAATGTTAATCAATCCAAGCCTGTTGCTGCTGGATGAACCCACTTCTGGCTTGGACTCTACAACAGCACAAAGGATCATAACCACAATCAAACGCTTGGCTAGTGGAGGGAGAACTGTTGTCACCACCATTCATCAACCCTCTAGTCGCCTCTATCACATGTTTGATAAACTGGTCTTGCTCTCTGAAGGATGCCCCATCTATTATGGCCCCGCTTCAACTGCAATGGCCTACTTTTCTTCTGTTGGTTTTTCCACATCCATGATTGTCAATCCAGCTGACTTGTTGCTTGATCTTGCCAATGGAATTGCTCCGGACTCCTCCAAGCTTGCAACTGAACAAAGTGAAAGCCAGGAGGCAGAAAATAAGTTGGTTAGAGAAGCCTTAATCTCTGCTTATGAAAAAAATATAGCTACTAAGCTGAAAGAAGAATTATGCAGCTTGGAATGCGAAGTCTTTAGGAATGCTTCCACAAGAAATCACATAAAACCGGAGCGATGGTGCACAAGTTGGTGGCATCAGTTCAAAGTGCTGTTGCAAAGGGGGCTGAAGGAGAGAAGGTTTGAAGCCTTCAACAAGCTGAGAATTTTCCAAGTCATAAGTGTCGCTTTCCTTGGAGGACTTCTGTGGTGGCACACCCCAGAATCCCACATTGGAGACCGGATAGCCCTTCTGTTTTTCTTCTCTGTCTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTCACATTCCCACAAGAGAGAAGAATGCTGATCAAGGAACGTTCATCTGGGATGTACCGTCTCTCATCCTACTTTCTAGCCAGAACAGTAGGAGACTTGCCAATAGAGCTTGCACTTCCAACTGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAATCCTCATCCACTGACCTTTCTCCTTTCCCTCCTAGTGGTCCTTTACAGTGTCCTTGTCTCTCAAAGCCTAGGCTTAGCACTTGGTGCCATTTTGATGGAGGTCAAACAGGCCACTACTTTAGCTTCTGTCACAACCCTTGTGTTCCTCATTGCCGGAGGGTACTATATACAGCAGATTCCTCCCTTCATAGAGTGGCTCAAGTACATAAGCTATAGCTACTACTGTTACAAGCTTCTTGTTGGTGTGCAGTACATGGATGATGATTATTATGAGTGCTCAAAAGGGGTCTTGTGCAAGGTTGGAGAATTTCCTCCAATAAAATCAGTGGGTTTGAACCACTTGTGGGTGGATGTGTCTATAATGGCCATGATGTTGGTAGGTTACAGACTAGTTGCTTATTTAGCACTGCAGAGAGTGAGGTAG 1947 0.4592 MTENCIALKPDHSNSHPQEGPPKITTQTVLPIQTNDQSFLKLAMYPITLKFEELVYKVKLEQKGLCWGSTRSSTEKTILKGITGMVCPGEIMAMLGPSGSGKTTLLTALGGRLSGKLSGKVTYNNRPFSGAMKRRTGFVAQDDVLYPHLTVTETLLFTALLRLPNILTKEEKAQHVEHVISELGLSRCRGSMIGGPLFRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIITTIKRLASGGRTVVTTIHQPSSRLYHMFDKLVLLSEGCPIYYGPASTAMAYFSSVGFSTSMIVNPADLLLDLANGIAPDSSKLATEQSESQEAENKLVREALISAYEKNIATKLKEELCSLECEVFRNASTRNHIKPERWCTSWWHQFKVLLQRGLKERRFEAFNKLRIFQVISVAFLGGLLWWHTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTVGDLPIELALPTAFVFIIYWMGGLNPHPLTFLLSLLVVLYSVLVSQSLGLALGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYISYSYYCYKLLVGVQYMDDDYYECSKGVLCKVGEFPPIKSVGLNHLWVDVSIMAMMLVGYRLVAYLALQRVR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02009 648 ProSitePatterns ABC transporters family signature. 201 215 IPR017871 GO:0005524|GO:0016887
Vian1g02009 648 Pfam ABC-2 type transporter 258 322 IPR043926 GO:0140359
Vian1g02009 648 Pfam ABC transporter 79 229 IPR003439 GO:0005524
Vian1g02009 648 CDD ABCG_EPDR 46 283 - -
Vian1g02009 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 301 IPR003439 GO:0005524
Vian1g02009 648 SMART AAA_5 88 278 IPR003593 GO:0016887
Vian1g02009 648 Gene3D - 67 295 IPR027417 -
Vian1g02009 648 FunFam ABC transporter G family member 22 66 295 - -
Vian1g02009 648 Pfam ABC-2 type transporter 387 592 IPR013525 GO:0016020|GO:0140359
Vian1g02009 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 294 IPR027417 -
Vian1g02009 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 641 - -
Vian1g02009 648 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02009 Vian-Chr1 24089127 24092222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02009 72 262 Calmodulin-binding Proteins AT2G36910 30.151 6.19e-11 63.9