Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01997 ATGGGTTCCAATGGTAGCAAAGCCACTCCTTCTTCTCCTTCTTCGTCGGGGAGTTTAAGGAAGGGTCGATCTAAGGGCTTTAGAGTTTTTCCATCTTATTGTCTTGGAACTACTTCTGGTTCTCACGACAGTGATAATGCAGACCAGGCTTGTGATCAGAATAAAGTAAATGGCAGTGATATTACATATGCTAATGGCAATGTAACAAATTCGCATGAGGTGAAAACAGAGTCATTTACAAAGGTTAAAGGTAGTGAAATAACTTGTATGCCTTCTAACATTGACATTCATGAATGGGGAGAAACAAGCATCCCCAACACCTCATCCAGAACTGCTAGCAGCTCTAGCCATAATTCTTCAACCCATTCCTTGAACCCTACAAGTCATTTCCTTTCTCAGCTTAGCCTCATTCCAGGTAGTGTAAGCTTCAGACTTAGCCGAACCACCAGTTTGGGGTCATCAAGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCAACAATTGACAATGAAGATGAGTGTAATCTCCACCCTAGATCTCCTGGAAGTTCGATTAACAGAAGAGAAGCACTACAAGGCAATGACCTGCTTCATGCATCTGTTTTCAATCAAATACATGTACAATCTCATGAAGATGCTTCTAGTAATTTAAGGTCAAGTGTCCTTACATCAGGTACACTTGGAAACTTGCAGAGAAATCCCATAGATGGAGTTCCCATAAGAGAAGGGCTGGATGTGAACTTATTTTCTCCAAGAATTTTAACAGAGACAGAAATTGATGACACTAGAAATATTGATCAACGAAATGGTGCTCGAGAATCAGTTGAACAGAATGTTCATTTTAGCCGAACTTTAAGTGTTGGAAGACTTCATGACAGAGTTCTTCGTAGAACAACATTTTCAGACCTCACCTTTTTCCCTTTGCAGCAGGAAAGAGAGCTGAGAGATGCTAGCCACCATAGCCAGGATATTGACAGGCAATCGCTGGAGGGAGATTCAAGAGTGTCATCATCTGATCACACGACCGTTAATTCTTCTACATCTAGCATGTCTAACTCCATGTTTGGTATCCAAGACTACGAGGATGATACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTTCTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCATGTATCTTGTCTGGTCAACATAGAAATGGGCATTGTACATGCCGAATCAATAATCGAAACACTAATTCAAATGATGATACCGGTGCCAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGGCCATCTGTATCTTGTAGTGGATCTGTTCCTGCGCCTAATGATGTTGTTGATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCACAAGCATCAAGAGGACGGTGCTCAATGCTATATATGCCTCGTGGAGTATGAGGATGGAGACAACATGAGAGTACTGCCATGCCATCACGAGTTTCATAGAACATGTATAGACAAGTGGCTGAAGCAGATTCACAGGGTATGTCCACTTTGTAGAGGAGACATATGCATATCCGATTCAACGCCAACAGAGCACAAGAGTGTGTAG 1701 0.4233 MGSNGSKATPSSPSSSGSLRKGRSKGFRVFPSYCLGTTSGSHDSDNADQACDQNKVNGSDITYANGNVTNSHEVKTESFTKVKGSEITCMPSNIDIHEWGETSIPNTSSRTASSSSHNSSTHSLNPTSHFLSQLSLIPGSVSFRLSRTTSLGSSRPCPVSSASLSTIDNEDECNLHPRSPGSSINRREALQGNDLLHASVFNQIHVQSHEDASSNLRSSVLTSGTLGNLQRNPIDGVPIREGLDVNLFSPRILTETEIDDTRNIDQRNGARESVEQNVHFSRTLSVGRLHDRVLRRTTFSDLTFFPLQQERELRDASHHSQDIDRQSLEGDSRVSSSDHTTVNSSTSSMSNSMFGIQDYEDDTSRLREGRYQDLLEHRSNFLERRRRMRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRINNRNTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSCSGSVPAPNDVVDSLPVKLYEKLHKHQEDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKQIHRVCPLCRGDICISDSTPTEHKSV 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01997 566 ProSiteProfiles Zinc finger RING-type profile. 508 550 IPR001841 -
Vian1g01997 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 554 IPR013083 -
Vian1g01997 566 Pfam Ring finger domain 507 550 IPR001841 -
Vian1g01997 566 SUPERFAMILY RING/U-box 486 556 - -
Vian1g01997 566 MobiDBLite consensus disorder prediction 98 125 - -
Vian1g01997 566 FunFam Putative RING zinc finger domain superfamily protein 477 555 - -
Vian1g01997 566 MobiDBLite consensus disorder prediction 1 24 - -
Vian1g01997 566 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 562 - -
Vian1g01997 566 MobiDBLite consensus disorder prediction 1 21 - -
Vian1g01997 566 MobiDBLite consensus disorder prediction 313 332 - -
Vian1g01997 566 MobiDBLite consensus disorder prediction 99 125 - -
Vian1g01997 566 MobiDBLite consensus disorder prediction 313 356 - -
Vian1g01997 566 SMART ring_2 508 549 IPR001841 -
Vian1g01997 566 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01997 Vian-Chr1 23856295 23860279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01997 239 563 C3H Transcription Factor Family AT5G45290 60.119 5.91e-117 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01997 - - gmx:100812272 855.129