Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01988 ATGGATGGTGGTGAATCTGTGTTGAACGGCAAAGTGGGAAGCATACTAATCGCCATTGGCACAGCCAGTTTCTTCATCACAGTTTTCCATCTCATAATCCTTTGTCGCACTCATCATCGTGTTCGTGTCATCAACCACAATCCACAACAACAACCACGCAGAGGTAACATTTCGGTCTCACCACACCTCATTCCGATCCACACCTACCGAAAGGAGAAGAAAAGCCATGATGAGGTGCCGGCGGAGGGCGACGACGACGAAGATGACATGTGCGCCGTGTGCTTGGGAGAGTTCGAAGACGGTGAAGAGTTGAGGACGCTGCCGGAGTGCTTGCACTCTTTCCACGTCGCCTGCATTGATCCGTGGCTCTCCTCCCGCTCCAGTTGCCCCGTTTGCCGCGCTCATGCCACGCCCTCGCCGGCGGTTGAGCACCCTGCGCCGGAGGTTGCTTCCGTTGGGTTCAGTGCGCATCACATCATAGATATAGATATTACACAAATTGTTGGCTTTCAAAATGGTTCAGCTCCACGCTGA 534 0.5337 MDGGESVLNGKVGSILIAIGTASFFITVFHLIILCRTHHRVRVINHNPQQQPRRGNISVSPHLIPIHTYRKEKKSHDEVPAEGDDDEDDMCAVCLGEFEDGEELRTLPECLHSFHVACIDPWLSSRSSCPVCRAHATPSPAVEHPAPEVASVGFSAHHIIDIDITQIVGFQNGSAPR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01988 177 SMART ring_2 91 132 IPR001841 -
Vian1g01988 177 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Vian1g01988 177 SUPERFAMILY RING/U-box 82 139 - -
Vian1g01988 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 140 IPR013083 -
Vian1g01988 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 137 IPR044675 -
Vian1g01988 177 Pfam Ring finger domain 89 133 IPR001841 -
Vian1g01988 177 CDD RING-H2_EL5-like 91 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01988 Vian-Chr1 23701688 23702221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01988 15 138 C3H Transcription Factor Family AT2G17450 38.710 6.48e-22 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01988 - - vra:106765957 332.413