Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01979 ATGGAACCGGGAACCCCATTAGAGAGTTCTTCCAATTTTGACTCTTTAATGTTTAATTCATCATCACACAGAAGTACCGGGTCCATTCAGTCCAGGAGTTCTGGTGTTAACAACTCCACCAGGGAAGTGAGTTTTGGCCACTTAGGATCCAAGCCAGCGAGATATGGGTCAACGGGTGCTGATTCCGAGTTTCTCAGTATGTCTCAGAAGGAAATACGTGATGAGGATGCAAGGTTGGTCTATGTTGATGATCCTGAGAAGACAAATGAAAAGCTTGAATTTGCAGGGAATTCGATTCTTACTGGAAAGTACTCCATCCTCACCTTTCTCCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTACTTCCTTGCAATTGCCATTCTTAATCAGCTCCCTCAGTTAGCTGTTTTTGGAAGGGGTGTTTCCATTATGCCATTGGCCATTGTGCTTCTGGTTACTGCTGTGAAGGATGCATTTGAGGACTGGAGGAGGCACAAGTCTGACAAAATTGAGAACAACAGGTTCGGATTGGTTTTGGTTAATGATCAGTTTGTGGAGAAGAAGTGGAAGCACATTAGAGTTGGGGAAGTTATTAAAATTAGAGCAAATGAAACCATTCCTTCTGATGTTGTGCTGCTCTCGACTAGTGACCCCACTGGGGTTGCGTATGTGCAGACTCTTAATCTGGATGGAGAGTCTAATTTGAAGACTAGGTATGCAAAGCAAGAGACTCAATCTAAGTTGCCAGAAAAGGAGAAGTTAAATCTGTTGATTAAGTGTGAGAAACCCAATAGGAATATATATGGGTTTCAGGGTAATATTGAAGTTGATGGAAAAAGGTTGTCTCTTGGATCCTCTAACATTGTTCTTAGAGGCTGTGAGCTCAAGAATACCAATTGGGCATTGGGAGTTGCCGTGTATTGCGGCCCTGAGACCAAAGCGATGCTCAACAGCTCAGGAGCTCCATCCAAAAGGAGTCTTCTTGAGACTCGCATGAACTCTGAGATCATTATGCTTTCTTTCTTTCTTATAGCTTTATGTGCAGTGACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGGATGAGTTGAATCTCTCACCTTATTATAGGAAGCTGGATTTTTCAAAGGGGGAAGAGGACAACTATAAATATTATGGATGGGGACCGGAAATTGTTTTCACTTTCCTCATGTCAGTCATAGTGTACCAGGTTATGATTCCCATATCCTTGTACATTTCGATGGAGCTTGTCCGTGTTGGTCAGGCATACTTCATGATCGGAGATTCGAGAATGTATGATAAGGCAACAGAGTCAAGATTTCAGTGCAGAGCTTTGAATATTAACGAAGATTTAGGCCAAATTAAATATGTCTTTTCTGATAAAACTGGCACACTGACTGAGAACAAGATGGAGTTTAAATGCGCAAGCATCTTGGGGTTTGATTACAGTTCAACGGCTGCCAATCTTGAGAATGAGCAAGTTGAATACTCTGTTCAAGCGGATGGGACGGTCTTTAAGCCAAAGATGATGGTGAAAGTTAATCAAGAGCTTTTGCAATTATCAAAGAGTGGATTTACAAATGAAGAGGGGAAACAGATTTATGATTTCTTTCTAGCATTGGCAGCCTGCAATACCATTGTGCCTCTTGTTGTTGACACATCCGATCCTATGGTCAAGCTGATAGATTACCAAGGGGAATCACCGGATGAGCAGGCATTGACTTATGCTGCCGCTGCGTATGGTTTTATGCTAATTGAACGAACCTCAGGTCACATAGTGCTTGATATTCGAGGAGAAAGGAAAAAGTTCAATGTCTTAGGTTTGCATGAATTTGATAGTGATCGAAAAAGGATGTCAGTTATACTGGGGTACAGTGACAATTGTGTGAAACTTTTTGTTAAAGGGGCAGATACATCCATGCTTAGATTGATTGACAAATCATTGAACACAGACATACTACAAGCAACCGAAACCCATCTTCGTTCTTATTCCTCTGTGGGTTTGAGGACACTTGTTGTTGGGATCCGGGACTTAGATGCTTCAGAATTTGAGCAATGGCACACTGCCTTTGAGGTAGCAAGTACTGCTTTGATGGGTAGGGCAGCTTTGCTTCGCAAGGTCGCTATCAATATAGAGAAGAATCTCTGCATATTGGGTGCAACTGCCATTGAAGATAAACTGCAGCAAGGTGTGCCAGAATCTATTGAGTCTCTAAGGACTGCAGGTATTAAAGTATGGGTCTTGACTGGGGACAAACAGGAAACTGCCATATCTATTGGATACTCCTCTAAGCTCCTAACGAGCAGCATGATTCAAATTATAATTAATACCAACAATAGAGAATCATGTAGAAGACGTTTACAAGATGCCCTTGTCATGTCTAGGCAAAACATGACTGTGCCTAGGGTTACTCACAATTCAGGAGGAAGTTCAGGATCTGTTTTAACTCTAGCCTTGATTATTGATGGTACCAGCCTTGTTTATATTCTTGACAGCGAGCTTGAAGATGAATTCTTTCAACTTGCAATTAGATGTTCTGTTGTTCTCTGTTGTCGAGTGGCTCCACTACAGAAAGCTGGGATTGTTGCCCTTGTGAAGAAGAGGACAGATGACATGACTCTAGCCATTGGAGATGGTGCTAATGATGTATCGATGATCCAAATGGCTGATATTGGAGTTGGAATCAGTGGACAGGAAGGTCGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTGTTGGTACATGGACATTGGAATTACCAACGACTGGGTTACATGATAATATACAACTTTTACAGAAATGCTATCTTTGTTCTTGTCTTATTTTGGTATGTGCTCTTTACTGCCTTCACATTGACAACAGCTATAAATGAATGGAGCAGCATGCTATACTCAATAATCTACACTGCATTGCCAACTATTGTTGTTGGTATTCTCGACAAGGATCTTAGTAAAAGGACTCTCCTAAAGAATCCTCAGCTTTATGGGGCCGGGCTGAGAAATGAGGCCTACAACAAAAAGCTGTTTTGGTTGACAATGGCCGATACTTTGTGGCAAAGCATTGCTGTCTTCTTTGCTCCCCTTATTGCATATTGGGGAACCACTGTAGACGTAGCAAGCATAGGTGACCTTTGGACTCTTGCAGTAGTTATTTTGGTTAATTTGCATCTGGCCATGGATGTCATCAGGTGGAATTGGATTACTCATGCAGCCATTTGGGGCTCTATTGTTGCAACTTTCATATCTGTCATGGTTATTGATGCTATACCAGCCTTTCCTGGTTACTGGGCTATCTTTGATGTTGGAGGCACTGCATTGTTCTGGTTATGTTTGGTTGGAATTGTAATAGCCGCATTACTTCCCAGATTAGTTGTAAAATACGTTCACCAGTATTATTTTCCCAGTGATATTCAGATTTCAAGAGAAACTGAGAAGTTTGGGAATCCAAGAGACAATGGAGGAAGACAGATAGAAATGCTTCCTGTTTCAGATGGTCCAGTAAGATAG 3552 0.4167 MEPGTPLESSSNFDSLMFNSSSHRSTGSIQSRSSGVNNSTREVSFGHLGSKPARYGSTGADSEFLSMSQKEIRDEDARLVYVDDPEKTNEKLEFAGNSILTGKYSILTFLPRNLFEQFHRVAYIYFLAIAILNQLPQLAVFGRGVSIMPLAIVLLVTAVKDAFEDWRRHKSDKIENNRFGLVLVNDQFVEKKWKHIRVGEVIKIRANETIPSDVVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQSKLPEKEKLNLLIKCEKPNRNIYGFQGNIEVDGKRLSLGSSNIVLRGCELKNTNWALGVAVYCGPETKAMLNSSGAPSKRSLLETRMNSEIIMLSFFLIALCAVTSVCAAVWLKRHKDELNLSPYYRKLDFSKGEEDNYKYYGWGPEIVFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIGDSRMYDKATESRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFKCASILGFDYSSTAANLENEQVEYSVQADGTVFKPKMMVKVNQELLQLSKSGFTNEEGKQIYDFFLALAACNTIVPLVVDTSDPMVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIVLDIRGERKKFNVLGLHEFDSDRKRMSVILGYSDNCVKLFVKGADTSMLRLIDKSLNTDILQATETHLRSYSSVGLRTLVVGIRDLDASEFEQWHTAFEVASTALMGRAALLRKVAINIEKNLCILGATAIEDKLQQGVPESIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTSSMIQIIINTNNRESCRRRLQDALVMSRQNMTVPRVTHNSGGSSGSVLTLALIIDGTSLVYILDSELEDEFFQLAIRCSVVLCCRVAPLQKAGIVALVKKRTDDMTLAIGDGANDVSMIQMADIGVGISGQEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRLGYMIIYNFYRNAIFVLVLFWYVLFTAFTLTTAINEWSSMLYSIIYTALPTIVVGILDKDLSKRTLLKNPQLYGAGLRNEAYNKKLFWLTMADTLWQSIAVFFAPLIAYWGTTVDVASIGDLWTLAVVILVNLHLAMDVIRWNWITHAAIWGSIVATFISVMVIDAIPAFPGYWAIFDVGGTALFWLCLVGIVIAALLPRLVVKYVHQYYFPSDIQISRETEKFGNPRDNGGRQIEMLPVSDGPVR 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01979 1183 SUPERFAMILY Calcium ATPase, transduction domain A 178 318 IPR008250 -
Vian1g01979 1183 Gene3D - 720 922 IPR023214 -
Vian1g01979 1183 SFLD p-type atpase 448 933 IPR044492 -
Vian1g01979 1183 FunFam Phospholipid-transporting ATPase 568 701 - -
Vian1g01979 1183 Gene3D - 563 702 IPR023299 GO:0000166
Vian1g01979 1183 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 470 736 IPR023299 GO:0000166
Vian1g01979 1183 FunFam Phospholipid-transporting ATPase 152 321 - -
Vian1g01979 1183 NCBIfam phospholipid-translocating P-type ATPase 94 1157 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vian1g01979 1183 Gene3D - 156 321 - -
Vian1g01979 1183 CDD P-type_ATPase_APLT_Dnf-like 96 1042 - -
Vian1g01979 1183 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 73 1160 - -
Vian1g01979 1183 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Vian1g01979 1183 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Vian1g01979 1183 SUPERFAMILY Calcium ATPase, transmembrane domain M 94 1149 IPR023298 -
Vian1g01979 1183 Pfam Phospholipid-translocating ATPase N-terminal 80 145 IPR032631 -
Vian1g01979 1183 MobiDBLite consensus disorder prediction 1 45 - -
Vian1g01979 1183 FunFam Phospholipid-transporting ATPase 720 922 - -
Vian1g01979 1183 Pfam Cation transport ATPase (P-type) 572 647 - -
Vian1g01979 1183 MobiDBLite consensus disorder prediction 1159 1183 - -
Vian1g01979 1183 NCBIfam HAD-IC family P-type ATPase 396 485 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01979 1183 NCBIfam HAD-IC family P-type ATPase 852 968 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g01979 1183 MobiDBLite consensus disorder prediction 1 57 - -
Vian1g01979 1183 ProSitePatterns E1-E2 ATPases phosphorylation site. 466 472 IPR018303 -
Vian1g01979 1183 SFLD C1.7: P-type atpase like 448 933 - -
Vian1g01979 1183 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1150 IPR032630 -
Vian1g01979 1183 SUPERFAMILY HAD-like 451 923 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01979 Vian-Chr1 23646111 23651284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01979 1 1183 Primary Pumps ATPases AT5G04930 67.990 0.0 1695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01979 K14802 - gmx:100784988 2066.58