Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01978 ATGGATGGGGTCGCACGTGCGGACAAGGCTCCGTCCACGGACTTGGTCTCGGAGTGGCGTCCCCGCGGTTCTGCGTTCGTCCCTTGTGTGCCAAAGCCTGGAGAAGAAGCTTCTGCTGCTGCTGCTGCTGAGAAGCCGCAACCGTCTCGCGTGGTTGTGAGGAAGCCCTTGGTGGCTAGATTGACCAAGGAAATAGTTCAAACATACAAAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAATCCAAAAAGATTTTTGACCAGCCCGTCAGTGGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATTTTGACAGTGAATTTTGTCTTGAACCATTTAGACAAAAATAAAAGCTATATTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCGGTGAAGATCATTAAAAACCAACCTGCATACTATCAACAAGCACTGGTTGAAGTAACTATCTTATCAACGTTAAATAAGAAGTATGATCATGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTACATCAACGACATTTGTGCATTTGCTTTGAATTGTTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTGTCCCTTGGTATTGTTCAGCTATTCTCTAAGCAGATTTTATGCGGACTTGCTCTGCTAAAAGAGGCTGGAGTTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATAAAAATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTACTCTTACATTCAGAGTCGATATTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGATGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCTGGAGCTTCAGAATTTGATCTTTTGAAACGGATGATTGAAATACTTGGAGGACAACCACCTGATTATGTACTTAGGGATGCTAAAAACTCAAGTAAATTCTTTAAGTGTGTTGGGAGTCTCCAGAACATAGAGAGCAGTGAGAGTTCCAAAAATGGAAGAAGTCTTTATCAAGTATTGACAGTGGAAGAATATGAAGCTAGAGAATTGAAGAAGCCGGCAATTGGAAAAGAGTATTTTAATCATATGAATCTAGAGGCAATTGTTACAAACTATCCCTACCGAAAAAATCTAGCTAAAGAAGATATTGTCAAAGAAAGTCAAATACGACTGGCTCTTATTGATTTTTTGAAAGGGCTTGTTGAATTGGATCCTTCAAAGCGCTGGTCACCTGTTCAGGCTTCAAAACACCCTTTTGTAACTGGGGAACCTTTTACACATCCTTACAAGCCTCCCCCTGAGACTCCTCAAATGCCAGTAGTTCAGAATATCAAGGTGGATAACCATCCAGGAGGAGGACACTGGTTTGCTGCCGGTCTATCACCTAATGTTCAGGGCAAAAGCAGAGCTTCACTCTATAGCAGTCCACATTTTCAGATGGTTCAACATCAGCCCGCTAATAGTTATGGGAGTGTAGGAAGCCATGGGAGCTATAATGATAGTATTGGGCTTGGAAGCAGCTACGGAAGTTATGGAGAAAGCACTAACATGTTTGCTTACTATTCACCTATTGGTCCATCTGGTATGAACATGCACAATCAGGGAGGTATGTCAATGCTTGGGAATAGTCCCGATGCTAGGAGAAGAGTTAAATACCAGCCTGGGAATGGCTTGGGCATAAGTCCATCAGCTGGAAATTTTGCTCCCCTGCCCCTTGGTGCGAGCCCGTCTCAATTTACTCCACCTAGTTCCTACAGTCAGGTTTCAGTTGTTTCTCCAGGACACTTTGGACCAACATCTCCTGCAAGAGGAACTTCTCACGGATCACCTTTAGGCAAGACAGCTGCAGTTAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAGCTCAAGAAACAACGTTTTCTTCACATTGGCAAAGTCCATATCCTGACAGCACAAGCCATACTGAGGGAACAACACAACCTCTCGGCAATTCACCATCATATCTACAGTCAACTTGTATTCCTGTAAACCGGAAACAGCGAGGAAGTGGAGGGTTATCTGCGAACCACAACATTTCGTGTTTGATTAAGCCCGGTGCTAATTTGAACTCACAAACAGAATTGGTTCATGACAATGCTGAGACAGGCATTTCATTGCCTGATCCTGGCGATTGGGACCCTAATTACAGTGATGAATTACTTCTTCAAGAGGATGGTTCAGATGAAAGCTCTTTGGCAAATGAGTTTGGCAGAAGTATGAATCTTGGATCTACTGAAACATGGGCTGGATTTGGAAGGTTCAACCATGTGTCCAGCTCTAATACTCCAATGACCATGCAAAGACTAAATGGACCAAATCAATCTTTTACTAACGTCGAGATGGGTAGCCTTCCAACGCATGATCTTCAAGCAGCATATGTACCCTCTCTGTCTAAGCAGTTTCATCTCATGCCTCATATTTTACATAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATATACACATGGTAGACCTCCCCAGGGTGCTGATTGGAATCAAATTAAAATTCAGGCTCCTTCTGGTTTCGGCAGTGTGGGTCCTCGTTCTCCGAGGAGTAACTCATTCACCAACAGTATGACATGGGGGCGCAGAATGGATCCTCAGGTATCAAGCATGCCTCCGACTTCCCGCTCAAGAAAAGATTATGCAAGGATAGACTAG 2847 0.4254 MDGVARADKAPSTDLVSEWRPRGSAFVPCVPKPGEEASAAAAAEKPQPSRVVVRKPLVARLTKEIVQTYKICNPQFKYSEDLNPKRFLTSPSVGVLNDGYDNVNSDLILTVNFVLNHLDKNKSYIVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILSTLNKKYDHEDKHHIVRIYDYFVHQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKEAGVIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEILGGQPPDYVLRDAKNSSKFFKCVGSLQNIESSESSKNGRSLYQVLTVEEYEARELKKPAIGKEYFNHMNLEAIVTNYPYRKNLAKEDIVKESQIRLALIDFLKGLVELDPSKRWSPVQASKHPFVTGEPFTHPYKPPPETPQMPVVQNIKVDNHPGGGHWFAAGLSPNVQGKSRASLYSSPHFQMVQHQPANSYGSVGSHGSYNDSIGLGSSYGSYGESTNMFAYYSPIGPSGMNMHNQGGMSMLGNSPDARRRVKYQPGNGLGISPSAGNFAPLPLGASPSQFTPPSSYSQVSVVSPGHFGPTSPARGTSHGSPLGKTAAVSQFNRRKNWGHSGSPQAQETTFSSHWQSPYPDSTSHTEGTTQPLGNSPSYLQSTCIPVNRKQRGSGGLSANHNISCLIKPGANLNSQTELVHDNAETGISLPDPGDWDPNYSDELLLQEDGSDESSLANEFGRSMNLGSTETWAGFGRFNHVSSSNTPMTMQRLNGPNQSFTNVEMGSLPTHDLQAAYVPSLSKQFHLMPHILHNSPSRFGHQSVQRYTHGRPPQGADWNQIKIQAPSGFGSVGPRSPRSNSFTNSMTWGRRMDPQVSSMPPTSRSRKDYARID 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01978 948 SUPERFAMILY Protein kinase-like (PK-like) 120 490 IPR011009 -
Vian1g01978 948 MobiDBLite consensus disorder prediction 619 716 - -
Vian1g01978 948 Gene3D Transferase(Phosphotransferase) domain 1 205 468 - -
Vian1g01978 948 PANTHER DUAL SPECIFICITY PROTEIN KINASE 10 470 - -
Vian1g01978 948 SMART serkin_6 124 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01978 948 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Vian1g01978 948 ProSiteProfiles Protein kinase domain profile. 124 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01978 948 Gene3D Phosphorylase Kinase; domain 1 89 204 - -
Vian1g01978 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Vian1g01978 948 CDD PKc_YAK1 124 467 - -
Vian1g01978 948 MobiDBLite consensus disorder prediction 903 948 - -
Vian1g01978 948 MobiDBLite consensus disorder prediction 908 939 - -
Vian1g01978 948 MobiDBLite consensus disorder prediction 649 716 - -
Vian1g01978 948 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 87 203 - -
Vian1g01978 948 Pfam Protein kinase domain 125 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01978 948 MobiDBLite consensus disorder prediction 624 641 - -
Vian1g01978 948 MobiDBLite consensus disorder prediction 585 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01978 Vian-Chr1 23596164 23631390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01978 124 348 Core Cell Cycle Gene Families AT1G66750 34.764 8.35e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vian1g01978 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01978 K18670 - gmx:100792777 1723.37