Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01972 ATGGCTACACTGCTGAGAAAACTGTGCGAATCCGCGTCGCTGAAGCGATCGGGTTCCAATCCGAACCCGAATCCGAACCCATCATCGGAACGCGCGCCATCTCCTCTGGGCGCCTTCGACACTCTCCCTGCCGACATACTCATGCAAATCGTGCGACTCGTGGGCCCCAAACACGCCGCCAGACTCAGCCTCCTCAGCAAGTCGTGGCGATCCCTTGTCTCCGACAACGACCTCTGGGTGCACTTCCTCCACACCCACCACCCTCTCTCAGCGCTCTTCGCGGAAACCGCTCTCAGCTCCGGATACCCTCTTCCGACCTTATCTGCTCAGAGCTCACCACGTGGCTCTCTCCAGCATGTTTATGCCCTCCGTGAACGCCTCCCTTCGTCCGTTGTTATCGACGGGGGCTCTGGCTATTGCAAATTCGGTTGGAGCAAAGGCTCTTCTCCTTCTGGGCGATTCGCGACCTTTCTGGAATTTGGTAACGTTGAAACGCCCATGTACACTAGACTTCGACATTTTTTCGGGACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAACCAGCTGTTGTTTCTATACCAATTTGTCACTATGATGATACTGAATCAGCCAAGGCATCAAGACAGCAGCTTAAAGAAGCAATCTATGCTGCTCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCTTCAAAACAAACTTCTGGGATTGCTGTTAATATAGGCTTTCAAGTGACATCCATTGTTCCAATTTTAAATGGTAAAGTGATGCGAAAAGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTAAAGCTTACTGGATTTCTTAGAAAACAAATGCAAGAGAACAACATAAGTTTTGAATCTTTATACACTGTCCGCACTCTGAAAGAGAAGTTATGTTATGTTGCTGCTGACTATGAAGCTGAGCTATTGAAAGATACAGAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGGGAGATATTATTCCAGCCACGACTTGCTGGGGTGCGAGCAATGGGTTTGCATCAGGCCGTCGCACTTTGTATGGATCACTGCTATTCTGCAGAATTAGCAGTTAACAACGATTGGTACAAGACTGTTGTCTTATCAGGGGGAACTGCCTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAGCTTCATTCGGCACTTCCTCCTTATATATCCAATGGAATTAGGGTCATACCTCCTCCATTCGGCGTGGATACTGCATGGTTTGGTGGAACGATTATTGGCAGTTTGAGCACCTTTCCTGGTCCATGGTGTACCACAAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGA 1404 0.4786 MATLLRKLCESASLKRSGSNPNPNPNPSSERAPSPLGAFDTLPADILMQIVRLVGPKHAARLSLLSKSWRSLVSDNDLWVHFLHTHHPLSALFAETALSSGYPLPTLSAQSSPRGSLQHVYALRERLPSSVVIDGGSGYCKFGWSKGSSPSGRFATFLEFGNVETPMYTRLRHFFGTIYNRMQVKPSSQPAVVSIPICHYDDTESAKASRQQLKEAIYAALFDMNVPAVCALNQGTLALYASKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLRKQMQENNISFESLYTVRTLKEKLCYVAADYEAELLKDTEASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLHQAVALCMDHCYSAELAVNNDWYKTVVLSGGTACLPGLAERLEKELHSALPPYISNGIRVIPPPFGVDTAWFGGTIIGSLSTFPGPWCTTKKQFRQKSKLNRIW 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01972 467 Pfam F-box domain 40 80 IPR001810 GO:0005515
Vian1g01972 467 Gene3D - 37 82 - -
Vian1g01972 467 SUPERFAMILY Actin-like ATPase domain 245 454 IPR043129 -
Vian1g01972 467 PANTHER ACTIN 172 459 IPR004000 -
Vian1g01972 467 Gene3D - 235 432 - -
Vian1g01972 467 SUPERFAMILY Actin-like ATPase domain 130 250 IPR043129 -
Vian1g01972 467 SMART actin_3 128 457 IPR004000 -
Vian1g01972 467 Gene3D Actin; Chain A, domain 4 278 360 - -
Vian1g01972 467 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Vian1g01972 467 CDD NBD_sugar-kinase_HSP70_actin 131 275 - -
Vian1g01972 467 Gene3D - 131 459 - -
Vian1g01972 467 MobiDBLite consensus disorder prediction 13 35 - -
Vian1g01972 467 SMART fbox_2 42 82 IPR001810 GO:0005515
Vian1g01972 467 Pfam Actin 179 453 IPR004000 -
Vian1g01972 467 SUPERFAMILY F-box domain 25 105 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01972 Vian-Chr1 23516293 23526263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01972 177 450 Cytoskeleton Gene Families AT3G12110 34.859 9.93e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01972 K16616 - gmx:100804254 842.417