LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g01972	ATGGCTACACTGCTGAGAAAACTGTGCGAATCCGCGTCGCTGAAGCGATCGGGTTCCAATCCGAACCCGAATCCGAACCCATCATCGGAACGCGCGCCATCTCCTCTGGGCGCCTTCGACACTCTCCCTGCCGACATACTCATGCAAATCGTGCGACTCGTGGGCCCCAAACACGCCGCCAGACTCAGCCTCCTCAGCAAGTCGTGGCGATCCCTTGTCTCCGACAACGACCTCTGGGTGCACTTCCTCCACACCCACCACCCTCTCTCAGCGCTCTTCGCGGAAACCGCTCTCAGCTCCGGATACCCTCTTCCGACCTTATCTGCTCAGAGCTCACCACGTGGCTCTCTCCAGCATGTTTATGCCCTCCGTGAACGCCTCCCTTCGTCCGTTGTTATCGACGGGGGCTCTGGCTATTGCAAATTCGGTTGGAGCAAAGGCTCTTCTCCTTCTGGGCGATTCGCGACCTTTCTGGAATTTGGTAACGTTGAAACGCCCATGTACACTAGACTTCGACATTTTTTCGGGACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAACCAGCTGTTGTTTCTATACCAATTTGTCACTATGATGATACTGAATCAGCCAAGGCATCAAGACAGCAGCTTAAAGAAGCAATCTATGCTGCTCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCTTCAAAACAAACTTCTGGGATTGCTGTTAATATAGGCTTTCAAGTGACATCCATTGTTCCAATTTTAAATGGTAAAGTGATGCGAAAAGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTAAAGCTTACTGGATTTCTTAGAAAACAAATGCAAGAGAACAACATAAGTTTTGAATCTTTATACACTGTCCGCACTCTGAAAGAGAAGTTATGTTATGTTGCTGCTGACTATGAAGCTGAGCTATTGAAAGATACAGAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGGGAGATATTATTCCAGCCACGACTTGCTGGGGTGCGAGCAATGGGTTTGCATCAGGCCGTCGCACTTTGTATGGATCACTGCTATTCTGCAGAATTAGCAGTTAACAACGATTGGTACAAGACTGTTGTCTTATCAGGGGGAACTGCCTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAGCTTCATTCGGCACTTCCTCCTTATATATCCAATGGAATTAGGGTCATACCTCCTCCATTCGGCGTGGATACTGCATGGTTTGGTGGAACGATTATTGGCAGTTTGAGCACCTTTCCTGGTCCATGGTGTACCACAAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGA	1404	0.4786	MATLLRKLCESASLKRSGSNPNPNPNPSSERAPSPLGAFDTLPADILMQIVRLVGPKHAARLSLLSKSWRSLVSDNDLWVHFLHTHHPLSALFAETALSSGYPLPTLSAQSSPRGSLQHVYALRERLPSSVVIDGGSGYCKFGWSKGSSPSGRFATFLEFGNVETPMYTRLRHFFGTIYNRMQVKPSSQPAVVSIPICHYDDTESAKASRQQLKEAIYAALFDMNVPAVCALNQGTLALYASKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLRKQMQENNISFESLYTVRTLKEKLCYVAADYEAELLKDTEASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLHQAVALCMDHCYSAELAVNNDWYKTVVLSGGTACLPGLAERLEKELHSALPPYISNGIRVIPPPFGVDTAWFGGTIIGSLSTFPGPWCTTKKQFRQKSKLNRIW	467

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g01972	467	Pfam	F-box domain	40	80	IPR001810	GO:0005515
	Vian1g01972	467	Gene3D	-	37	82	-	-
	Vian1g01972	467	SUPERFAMILY	Actin-like ATPase domain	245	454	IPR043129	-
	Vian1g01972	467	PANTHER	ACTIN	172	459	IPR004000	-
	Vian1g01972	467	Gene3D	-	235	432	-	-
	Vian1g01972	467	SUPERFAMILY	Actin-like ATPase domain	130	250	IPR043129	-
	Vian1g01972	467	SMART	actin_3	128	457	IPR004000	-
	Vian1g01972	467	Gene3D	Actin; Chain A, domain 4	278	360	-	-
	Vian1g01972	467	ProSiteProfiles	F-box domain profile.	36	82	IPR001810	GO:0005515
	Vian1g01972	467	CDD	NBD_sugar-kinase_HSP70_actin	131	275	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g01972	Vian-Chr1	23516293	23526263	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g01972	177	450	Cytoskeleton Gene Families	AT3G12110	34.859	9.93e-43	153

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g01972	K16616		-	gmx:100804254	842.417

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