Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01971 ATGGAGAAACTCAAAGTGTCGACAAAGCATGATTCTGATGGCAGCAGTGATCAGGCAGATTCATTTCCAATATTCGAATTGCGCGAGAGTCAAAATGTTGGACAGCAGAGGTATAGAAGAGAGGAAGATGATACAAAAGCTGTGAGATTCGATGGAGCTTCTGCAATTGCTTCCTCTAATTCTGCAAGCAGTAAGGAATCTGCCAACAAGTGGATGGCATTTGCTAGGGACCCTGGTTCTGCAGTTGATAGCAACTCAGCAATAAATGATAAAAGTACAACTGAAGACAATTACTTGAGGAATCATCTGAGTGATAAGTCTTCTTCTGATCAACAAGTTTTAACTGAAGCAACCATAGCTGAGAGAACTGCAGAATGGGGTGTTGTGGTGAACTCTGGGAACTTCAAAACCAGTTCTTCTTTCGATGGTGACAGAACCAGAAACTTGTCAGATAGATTTGTTGAATCAACAAGGACATCTGGGGATTCAAATTTTGGATCTGAGTCATCATCAGGGGTTTTAAGGGTGTCACAAGAGTTGAAGGATGCATTGGCGACGCTGCAACAGACATTTGTTGTCTCAGATGCAACTAAACCAGACTGCCCAATTATGTATGCCAGTAGTGGCTTTTTCACTATGACTGGCTATTCTTCAAAGGAGATTATTGGAAAGAATTGTCGGTTTCTTCAGGGGGCTGATACAGACAAGAATGAAGTGGCGAAAATTCGGGATGCTATTAGAAACGGAAGAAGTTATTGTGGCAGATTATTAAACTACAAGAAAAATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCAATCAAAGATAACCAAGGCAATACTATCAAATTCATCGGAATGCAGGTTGAGGTGAGCAAGTACACTGAAGGAGTGAATGAAAAGGCGTTACGACCAAATGGATTACCAAAGTCATTAATTCGATATGATGCTCGTCAAAAGGAAAAAGCTTTGGGTTCCATCTCCGAGGTTGTCCAAACTGTTAAGGACCCAAAATCTATTATTAAAAATAGGAGTGATGATAATGCCTCCATGCAAGAAGTGGAACAGAAAATGAATCTTGATTTTGCTTTGCCAAAGTCTGCTGTTGCTGGGAATACAAGCACACCTGGTAGACAACCTTCTCCACTTAACATCCAACGAGTGAGTTCTAATCAGGAAAAGGTCAGAACATCACGATCAGGACGGATTTCTTTCAAGGGTTTTAAAGGGAAATCTCAGAGTTATAGTGGGAGAGATGAGGAGAAGTACACTGTTGAACCTGAGGTTTTGATGACCAAAGAAATAGAGTGGTCGAACAATTTGGAGAACTCACTAAGAGAGAGAGACATGAGGCAAGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAACTTCGTGATTTCTGATCCTAGACTGCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAGCTTACGGAATACACACGAGAAGAAATTCTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTACACTAAGAGTGGAAAGAAGTTTTGGAATTTGTTTCACTTGCAACCCATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGCGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCTACAGAGTGCTAAGTTGGTGAAAGCCACTGCAGAAAATGTGGACGAAGCTGTCCGAGAACTTCCCGATGCCAACTTGGTAAGGTATTCCATTTGGAGGCCAGAAGATTTGTGGGCAATTCATTCCCAACCTGTATATCCACGACCTCACAGAAAGGATAATCCTTCTTGGATAGCAATACAAAAGGTTACTGCAAGAGGCGAAAAAATTAGTCTGCAACATTTTGTGCCCATAAGGCCACTAGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCAAAGGCACTGGTGAACTATATGCAATGAAAGCAATGGAAAAGTCTGTCATGCTAAATCGTAATAAGGTTCACCGATCATGCATTGAGAGAGAGATTATATCATTATTGGATCACCCTTTTCTTCCAACACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTTCTGACTTCTGCCACGGGGGAGAATTGTTTGCATTGCTTGACAAACAACCAATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTTTCTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATGTTGTATTAACTGATTTTGATCTATCATCTATGACATCGTGTAAACCCCAGGTTGTGAAGCAAGCATTACCTGGTAAAAGAAGAAAATCACGAAGTGAACCTCCACCAATACTTGTTGCAGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTGCCCCTGAAATTATAACTGGAGCTGGGCATACCAGCGCTATAGATTGGTGGACTCTTGGTATCTTATTGTATGAGATGCTGTATGGTCGCACACCATTTAGAGGAAAGAATAGACAGAGGACATTTTCCAACATCTTACACAAGGATCTTACCTTCCCAAGCAGCATCCCGGCCAGTCTTGCAGCCAGGCAGTTGATTAATGCACTACTGCAGAGAGATCCAACAAGTCGTCTAGGTTCAACCACTGGTGCAAATGAAATCAAGCAACACCCTTTTTTCCGTGGAATCAATTGGCCTCTAATCCGCAACATGAGTCCACCTCCATTAGATGTTCCTCTAAAATTGATAGGAAAGGATCCAGTGGCGAAGGATATAAATTGGGAAGATGATGGAGTGCTAGTTAGCTCCATTGATATGGATATTTTTTGA 2991 0.4129 MEKLKVSTKHDSDGSSDQADSFPIFELRESQNVGQQRYRREEDDTKAVRFDGASAIASSNSASSKESANKWMAFARDPGSAVDSNSAINDKSTTEDNYLRNHLSDKSSSDQQVLTEATIAERTAEWGVVVNSGNFKTSSSFDGDRTRNLSDRFVESTRTSGDSNFGSESSSGVLRVSQELKDALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGKNCRFLQGADTDKNEVAKIRDAIRNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDNQGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSISEVVQTVKDPKSIIKNRSDDNASMQEVEQKMNLDFALPKSAVAGNTSTPGRQPSPLNIQRVSSNQEKVRTSRSGRISFKGFKGKSQSYSGRDEEKYTVEPEVLMTKEIEWSNNLENSLRERDMRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETTELQSAKLVKATAENVDEAVRELPDANLVRYSIWRPEDLWAIHSQPVYPRPHRKDNPSWIAIQKVTARGEKISLQHFVPIRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCIEREIISLLDHPFLPTLYTSFQTSTHVCLISDFCHGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHFLGIIYRDLKPENILLQKDGHVVLTDFDLSSMTSCKPQVVKQALPGKRRKSRSEPPPILVAEPITQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQRTFSNILHKDLTFPSSIPASLAARQLINALLQRDPTSRLGSTTGANEIKQHPFFRGINWPLIRNMSPPPLDVPLKLIGKDPVAKDINWEDDGVLVSSIDMDIF 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01971 996 ProSiteProfiles PAS repeat profile. 453 526 IPR000014 -
Vian1g01971 996 SUPERFAMILY PYP-like sensor domain (PAS domain) 472 568 IPR035965 -
Vian1g01971 996 FunFam LOV domain-containing protein 442 606 - -
Vian1g01971 996 CDD PAS 476 568 IPR000014 -
Vian1g01971 996 SUPERFAMILY Protein kinase-like (PK-like) 634 973 IPR011009 -
Vian1g01971 996 Gene3D Transferase(Phosphotransferase) domain 1 744 962 - -
Vian1g01971 996 Gene3D Phosphorylase Kinase; domain 1 659 743 - -
Vian1g01971 996 ProSitePatterns Protein kinases ATP-binding region signature. 666 689 IPR017441 GO:0005524
Vian1g01971 996 ProSiteProfiles PAS repeat profile. 176 249 IPR000014 -
Vian1g01971 996 Gene3D PAS domain 190 362 - -
Vian1g01971 996 SMART pac_2 530 572 IPR001610 -
Vian1g01971 996 SMART pac_2 253 295 IPR001610 -
Vian1g01971 996 Pfam PAS domain 197 293 IPR000014 -
Vian1g01971 996 Pfam PAS domain 476 568 IPR000014 -
Vian1g01971 996 MobiDBLite consensus disorder prediction 1 16 - -
Vian1g01971 996 Pfam Protein kinase domain 663 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01971 996 PANTHER FLIPPASE KINASE 1-RELATED 125 963 - -
Vian1g01971 996 SUPERFAMILY PYP-like sensor domain (PAS domain) 197 289 IPR035965 -
Vian1g01971 996 CDD PAS 203 292 IPR000014 -
Vian1g01971 996 FunFam Putative LOV domain-containing protein 190 346 - -
Vian1g01971 996 SMART serkin_6 660 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01971 996 ProSiteProfiles PAC domain profile. 527 581 IPR000700 -
Vian1g01971 996 ProSiteProfiles Protein kinase domain profile. 660 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01971 996 SMART pas_2 455 524 IPR000014 -
Vian1g01971 996 SMART pas_2 178 247 IPR000014 -
Vian1g01971 996 FunFam Putative LOV domain-containing protein 744 959 - -
Vian1g01971 996 NCBIfam PAS domain S-box protein 203 293 IPR000014 -
Vian1g01971 996 NCBIfam PAS domain S-box protein 479 570 IPR000014 -
Vian1g01971 996 ProSiteProfiles PAC domain profile. 250 304 IPR000700 -
Vian1g01971 996 CDD STKc_phototropin_like 658 970 - -
Vian1g01971 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Vian1g01971 996 Gene3D PAS domain 442 606 - -
Vian1g01971 996 MobiDBLite consensus disorder prediction 1 45 - -
Vian1g01971 996 FunFam LOV domain-containing protein 659 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01971 Vian-Chr1 23498448 23509890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01971 117 995 AGC Kinase Gene Family AT5G58140 73.453 0.0 1296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vian1g01971 Pkinase 6.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01971 K20715 - gmx:100804783 1707.58