Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01961 ATGGGTAGTAGTGACATGGACAAAACCCCTAAGGAGAAGGAGTCTAAGACACCTCCAGCTACGTCACAGGAGCAGTCTCCAACAACTGGCATGGCCACTATTAATCCTGACTGGTCTAACTTTCAGACATATTCTCCCATACCTCCTCACAGTTTCTTGGCATCAAGTCCCCAAGCCCACCCATTTATGTGGGGTGTCCAGCATGTTATGCCTCCCTATGGCACCCCACCGCATCCTTATGTAGCAATGTATCCCCATGGTGGCATTTATGCCCATCCATCCATTCCTCCGGGCTCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTATTGCAGATTCTTCGGGAAATAACCCAGGCACCATTGAAGTTGGTGCTAAACCTCCTGAGGTGAAGGAAAAATTACCAGTCAAAAGATCAAAAGGAAGTGCTAGTGGGGGTAGTTTGAATATGTGGATTACAGGAAAAAATAGTGAACTTGGTAAAACAAACGGAGAATCTGCTAATGGAATTCATTCCAAGAGAAAATATATTGGTAGGGCAGGGTTTCCAAATGGTGATAGTGCAAGTGACGGAACTAGTGAAGGAAGTGGTGAGAATTCCCAGAATGATTCTCAATTGAAATCCGGGGAGAGGCAGGACTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCGGCTCCTCAAAACGGGGTACATAGTAGACCTCAGACACTTGTTAACCAAACTATGCCTGCCATACCTATATCTACTGCAAGTGCTCCCGGAGCAATTCCTGGTCCCACAACTAATTTAAATATAGGAATGGATTACTGGGGCACGCCAACTTCATCCGTCATTCCTGCACTGCATGGAAAGGTTTCTTCTACTGCCGTTGCTGGGGGGATGATTACTGCTGGGTCAAGAGATGGTGTTCAGTCACAAATTTGGCTACAGGACGAAAGAGAGCTTAAAAGACAAAGGCGGAAGCAGTCTAATAGAGAATCTGCACGCAGATCCAGGTTACGGAAGCAGGCTGAATGCGATGAACTAGCTCAGCGTGCTGACGTTTTGAAAGAAGAAAATGCCACTCTCCAAGCAGAAGTAAGCAGGATCAGGAGTGAGTACGAGCAGCTACTTTCTGAGAATGCTTCCCTCAAGGAGAGACTTGGGGAGATACCTGGTGTTGCTACGCCTGGGAACGAGGATGTTAGGTCTGGCCAGAATGATCAGCATGTTACTAATGACACTCAACAAAGCCGTCAGAAGGAGGCTGTGCAGGGTGTTCATTAG 1278 0.4664 MGSSDMDKTPKEKESKTPPATSQEQSPTTGMATINPDWSNFQTYSPIPPHSFLASSPQAHPFMWGVQHVMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMASPNGIADSSGNNPGTIEVGAKPPEVKEKLPVKRSKGSASGGSLNMWITGKNSELGKTNGESANGIHSKRKYIGRAGFPNGDSASDGTSEGSGENSQNDSQLKSGERQDSFEDEPSQNGSSAPQNGVHSRPQTLVNQTMPAIPISTASAPGAIPGPTTNLNIGMDYWGTPTSSVIPALHGKVSSTAVAGGMITAGSRDGVQSQIWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLQAEVSRIRSEYEQLLSENASLKERLGEIPGVATPGNEDVRSGQNDQHVTNDTQQSRQKEAVQGVH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01961 425 MobiDBLite consensus disorder prediction 382 425 - -
Vian1g01961 425 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 323 338 IPR004827 GO:0003700|GO:0006355
Vian1g01961 425 Pfam Disordered region downstream of MFMR 135 283 - -
Vian1g01961 425 MobiDBLite consensus disorder prediction 221 237 - -
Vian1g01961 425 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 417 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vian1g01961 425 MobiDBLite consensus disorder prediction 128 237 - -
Vian1g01961 425 Coils Coil 336 384 - -
Vian1g01961 425 MobiDBLite consensus disorder prediction 145 172 - -
Vian1g01961 425 MobiDBLite consensus disorder prediction 189 211 - -
Vian1g01961 425 MobiDBLite consensus disorder prediction 19 40 - -
Vian1g01961 425 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vian1g01961 425 SUPERFAMILY Leucine zipper domain 319 375 IPR046347 GO:0003700|GO:0006355
Vian1g01961 425 SMART brlzneu 316 380 IPR004827 GO:0003700|GO:0006355
Vian1g01961 425 Gene3D - 319 373 - -
Vian1g01961 425 MobiDBLite consensus disorder prediction 1 18 - -
Vian1g01961 425 Pfam bZIP transcription factor 316 378 IPR004827 GO:0003700|GO:0006355
Vian1g01961 425 CDD bZIP_plant_GBF1 321 371 IPR045314 GO:0003700|GO:0006355
Vian1g01961 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 318 381 IPR004827 GO:0003700|GO:0006355
Vian1g01961 425 MobiDBLite consensus disorder prediction 318 339 - -
Vian1g01961 425 MobiDBLite consensus disorder prediction 1 40 - -
Vian1g01961 425 MobiDBLite consensus disorder prediction 397 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01961 Vian-Chr1 23355081 23361133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01961 1 389 bZIP Transcription Factor Family AT2G35530 60.349 1.00e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian1g01961 MFMR_assoc 3.9e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01961 K09060 - gmx:100101912 734.176