Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01959 ATGACAACCCTTCGTGTGCTGCTTTTTCTGGGATTCTTGTGGGCTGAAATTCATGTCATTTCTTCATACACTGAAACTGAAGACGTTGTTGCACTTAGATCATTAAAAGATGTATGGCAAAATACACCGCCCAGCTGGGACAAATCAGATGACCCATGTGGAGCACCATGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTAGGACTGTCAACAATGGGCCTGAAGGGGAAATTAAGTGGAGATATTGGTCAACTTACAGAACTGAGATCCTTGGATTTGTCTTTTAATAGAGATTTAACAGGTCCTCTCTCTCCAGAGTTAGGAGAACTAAGCAAGCTAAATATCCTGATTTTGGCTGGTTGCGGCTTCAGTGGCAATATTCCAGATGAATTAGGAAATCTTTCAGAGTTATCTTTCCTGGCTTTAAACTCAAACAACTTCACTGGAAAAATACCTCCTTCGTTGGGTAAACTCTCCAAAATTTATTGGTTGGACTTGGCAGACAATCAGCTGACAGGTCCTATCCCAGTTTCAACCTCCACCTCCCCTGGATTAGACCTTCTTTTAAAGGCTAAACACTTCCATTTCAATAAGAACCAGCTTTCAGGTTCCATTCCCCCCAAGCTTTTCAGCTCTGAGATGATACTCATACACATATTGTTTGATGGGAATAATTTAAGTGGGACTATACCTTCAACATTGGTACAAGTTAAGACTGTTGAGGTTCTACGGCTTGATAGGAATTTCCTGACAGGAGAGGTCCCATCAAATCTCAACAACCTTACAAACATCAATGAATTGAATTTAGCTCATAACAATTTCACAGGTCCTCTACCTGACTTAACTGGAATGGATACCCTCAACTATGTAGATCTTAGTAACAACTCTTTTGATCCTTCTGATGCTCCAACTTGGTTCATAACTCTGCAATCACTCACCACTCTGGTTATGGAGTTTGGGTCCCTTCAAGGTCCTCTTCCATCGAAACTATTTGACATTCCTCAAATACAGCAAGTGAAACTACGAAACAATCAATTGAACGATACACTGAACATGGGTGAAAACATTTGTCCTCAATTGCAGCTTGTAGATTTGCAACAAAATGAGATTTCCTCGGTGACTCTCAGTTCACAATACAAAAATACATTGATTCTAATAGGAAATCCAGTGTGCAGTAGTGCTCTCTCAAATACAAATTACTGCCAACTTCAGCAGCAGGCTAAGCAACCTTATTTCACCAGCTTGGCTAATTGTGGAGGCAAATCTTGTCCTCCTGATCAAAAGCTCAGCCCCCAAAGTTGTGAATGTGCCTATCCATATGAAGGAATGCTGTACTTTAGAGCACCCACATTCAGAGAACTGTCCAATGTAAATACTTTCCATTCACTTGAAATGAGCCTATGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTACAAAATCCCTTCTTTGATAGTAATGACTATCTTCAAGTGCAACTAGCACTTTTTCCACCAACAGGGCAATACTTTAATAGGTCAGAAGTTCAAAGAATTGGGTTTGAATTAAGTAATCAAACTTACAAGCCTCCAAAAGAGTTTGGACCCTATTACTTCCTTGCATTTTCTTATCCCTTTTCAGGTTCTCACAAAGGAGCTTCTCTTAGCAAAGGGGTTATTATTGGGATAGCAGTTGGCAGCACATTTCTGGTTCTGAGTCTTATAGGGTTAGCTATTTACGCGATTCTGCAAAAGAAGCGTGCAGAGAGAGCCATAGGATTAAGTAGACCATTTGCATCATGGGCACCAACTGGGAAGGATAGTGGAGGTGCACCACAGTTAAAGGGAGCAAGATGGTTCTCTTATGATGATCTCAAGAAGTGCACCAGCAATTTCTCTGAAAACAATGAGATAGGCTCTGGAGGCTATGGCAAGGTGTACAAAGGTGTTCTTCCTGATGGGAAAATCGTTGCAATCAAACGAGCTCAGCAAGGATCGATGCAAGGAGGCCTAGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAACCTTGTTGGCCTTGTGGGGTTCTGCTTCGAACAAGGGGAACAGATGTTGGTTTACGAATTTATACCCAATGGAACACTTAGGGAGAGTTTGTCAGGGAGATCTGATATTCATCTTGACTGGAAAAGGAGACTCCGCATTGCTCTTGGTTCAGCCAGAGGACTTGCATACTTACACGAACTTGCCAATCCTCCCATAATTCACAGAGATGTGAAGTCGAGTAATATCTTGCTGGATGAAAATTTGACTGCAAAGGTTGCAGATTTTGGCTTGTCCAAACTTGTATCAGACAGCGAGAAAGGCCATGTTTCCACTCAGGTTAAAGGGACATTGGGTTATCTTGATCCTGAGTATTACATGACCCAACAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGAGTAGTGATGCTTGAACTAATAACTTCAAGACAACCAATTGAGAAGGGCAAGTACATTGTCCGCGAGGTGCGCACGCTGATGAATAAGAAAGATGAAGAACACTATGGTTTGAGGGAAGTGATGGATCCAGTGGTGAGGAACACACCGAACCTCATAGGATTTGGGAGGTTCTTAGAGTTGGCAATGCAATGTGTTGAGGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGGATGAACACAAACTCTACTTCTGCATCCTCATCTGCCACTGACTTTGGTGTTTCCAAGGGTGGAATGAGGCATCCCTACATTGATGCTTCTTTTACCAAGAAAGACAATGGTAATGACAGTAGTAATAGTGCCTTTGACTACAGCGGAGGCTACACACTTTCAACAAAAGTTGAACCCAAATAG 2904 0.4198 MTTLRVLLFLGFLWAEIHVISSYTETEDVVALRSLKDVWQNTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGQLTELRSLDLSFNRDLTGPLSPELGELSKLNILILAGCGFSGNIPDELGNLSELSFLALNSNNFTGKIPPSLGKLSKIYWLDLADNQLTGPIPVSTSTSPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSEMILIHILFDGNNLSGTIPSTLVQVKTVEVLRLDRNFLTGEVPSNLNNLTNINELNLAHNNFTGPLPDLTGMDTLNYVDLSNNSFDPSDAPTWFITLQSLTTLVMEFGSLQGPLPSKLFDIPQIQQVKLRNNQLNDTLNMGENICPQLQLVDLQQNEISSVTLSSQYKNTLILIGNPVCSSALSNTNYCQLQQQAKQPYFTSLANCGGKSCPPDQKLSPQSCECAYPYEGMLYFRAPTFRELSNVNTFHSLEMSLWVKLGLTPGSVSLQNPFFDSNDYLQVQLALFPPTGQYFNRSEVQRIGFELSNQTYKPPKEFGPYYFLAFSYPFSGSHKGASLSKGVIIGIAVGSTFLVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPTGKDSGGAPQLKGARWFSYDDLKKCTSNFSENNEIGSGGYGKVYKGVLPDGKIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFIPNGTLRESLSGRSDIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSSNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLREVMDPVVRNTPNLIGFGRFLELAMQCVEESAADRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGVSKGGMRHPYIDASFTKKDNGNDSSNSAFDYSGGYTLSTKVEPK 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01959 967 SUPERFAMILY Protein kinase-like (PK-like) 615 911 IPR011009 -
Vian1g01959 967 SUPERFAMILY L domain-like 35 397 - -
Vian1g01959 967 FunFam Leucine-rich repeat protein kinase family protein 597 704 - -
Vian1g01959 967 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Vian1g01959 967 PANTHER RECEPTOR-LIKE PROTEIN 55 33 902 - -
Vian1g01959 967 Gene3D Phosphorylase Kinase; domain 1 603 704 - -
Vian1g01959 967 Gene3D Ribonuclease Inhibitor 284 425 IPR032675 -
Vian1g01959 967 FunFam Predicted protein 186 407 - -
Vian1g01959 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Vian1g01959 967 Gene3D Transferase(Phosphotransferase) domain 1 705 924 - -
Vian1g01959 967 ProSiteProfiles Protein kinase domain profile. 629 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01959 967 FunFam Leucine-rich repeat family protein 27 184 - -
Vian1g01959 967 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Vian1g01959 967 Pfam Protein tyrosine and serine/threonine kinase 632 899 IPR001245 GO:0004672|GO:0006468
Vian1g01959 967 Gene3D Ribonuclease Inhibitor 28 183 IPR032675 -
Vian1g01959 967 MobiDBLite consensus disorder prediction 936 967 - -
Vian1g01959 967 Gene3D Ribonuclease Inhibitor 184 283 IPR032675 -
Vian1g01959 967 SMART serkin_6 629 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01959 967 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 705 916 - -
Vian1g01959 967 CDD STKc_IRAK 635 902 - -
Vian1g01959 967 MobiDBLite consensus disorder prediction 940 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01959 Vian-Chr1 23338186 23343419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01959 2 967 Receptor kinase-like Gene Family AT1G79620 70.322 0.0 1422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vian1g01959 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01959 - - gmx:100792249 1792.32