Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01956 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGTCGGTGGTTCCTATGATGAGAGAAGGTTTCTTGATGAAAGATATCCAAGGGATCCAGTTTACCAGAGAAATAATTTCCACCCTGACATTTTGGATAGGGAGGCCTACCTGCCGCCAGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTATCCTCTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTTCAGGACATGAACGTGACGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGACTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGGCGACGCGAATCAAGGGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGAACTGAGTCCACGTAGGAGGCATGAGCGTTCACGCTCACGATCACATTCTCGTTCGCGCTCACGTTCTCGATCCCGATCCCATTCTCACTCCCATTCTCATTCCCGGTCTCAGTCTCGTGGATATGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAAGGTGAAAGACGTCGGGATCGCGATGATAAACGACAGCGCGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTAGTGAAAGGTCTTTCGCAGAAGACAACCGATGAAGATCTATACCAAATCCTTGCTGAATGGGGGCCCCTTCGTCACGTTCGAGTTATAAAGGAGAGAAATTCTGGAGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTTTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCTGGTCCGGATGGATCTGTGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGAACATCCTGCTATCAGTGTAATGAGCCTCGAACTGACGATGCTCCTGCAGCAGACATTTCATTATCAAATTCAGCAGCTACCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAATTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAAGATGCTACCAAAGCCCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCTAGCAGTCTTGCAGCTGCTGCTATTGAAGCTGCAACGTTTGCCCAACAGTATGATTCAGTGGGATGGGCTCCAAAAGAGTATAACCCAGACGACAAACTATCTACTGGTCAAGAGCAACCTGGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGCTTTTACTATGACGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTATATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTATATCGGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCAACAGCAGCTTTAGCTGCAGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAGCTTGCATCAAAGAGCAGCATTCTGGCAAATAAGAAAAAAATGAACAATGTATTAACAATGTGGAAGCAGAGGAGCCATGAGGGACAGGCTACTAGAGTGGCTCTGGAAGACAATCAGCCTTCGGTTTCAGCTGATGATAGGTCATATTCTGCCGGGCATTCTGCTAAGAATAAGTCAAAAAGTGAGATTATGGTAAGGGAAACTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTACTGCTATTGATTCTCAGGCACAGCCACGACCGGTTAGTAATAGTCTTGGAGGGACTGTGATGGGGGTCATAAGGGGCTCAGGAAGGGGGGTTGCTAAATCAGATAGTTATTCAGGTTCTACATCTGTTGCATCATCTATGCATGGTTCATCTTCAGCAAATGTTGATCCACAGACAGTTGCTACTCCCTTTAGAACAGATGTGTCTGCCCTGAGTTCATATACACCGCCTGCTACAGTTGGAAGTGGGCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAACTCACAAGGAACAACCTCAGACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGGGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCCGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACGTTGATACTTTTGAGGTGATTACGGCAGACAGAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCCCTAGCCAGGTTTCGGGAGATGTCAGACAATTAA 3210 0.4586 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFLDERYPRDPVYQRNNFHPDILDREAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFSGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGELSPRRRHERSRSRSHSRSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREGSYTESRYDKGERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGFVVDGRKLFFEYSSKPTGGPGPDGSVKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGQEQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPSKTSDGSGSKKVISAPATTVISVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSAGHSAKNKSKSEIMVRETNASNPGIHTTLAQVTAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVAKSDSYSGSTSVASSMHGSSSANVDPQTVATPFRTDVSALSSYTPPATVGSGRRRFSEMPLPASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNVDTFEVITADRAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDN 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01956 1069 MobiDBLite consensus disorder prediction 842 871 - -
Vian1g01956 1069 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 551 IPR000504 GO:0003723
Vian1g01956 1069 MobiDBLite consensus disorder prediction 589 613 - -
Vian1g01956 1069 SMART zf_4 418 442 IPR001876 -
Vian1g01956 1069 MobiDBLite consensus disorder prediction 847 871 - -
Vian1g01956 1069 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 394 IPR000504 GO:0003723
Vian1g01956 1069 MobiDBLite consensus disorder prediction 229 255 - -
Vian1g01956 1069 MobiDBLite consensus disorder prediction 163 311 - -
Vian1g01956 1069 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 375 IPR000504 GO:0003723
Vian1g01956 1069 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 539 IPR000504 GO:0003723
Vian1g01956 1069 CDD RRM1_RRM2_RBM5_like 469 549 - -
Vian1g01956 1069 Pfam OCRE domain 613 661 IPR041591 -
Vian1g01956 1069 MobiDBLite consensus disorder prediction 769 794 - -
Vian1g01956 1069 MobiDBLite consensus disorder prediction 67 86 - -
Vian1g01956 1069 MobiDBLite consensus disorder prediction 769 789 - -
Vian1g01956 1069 Pfam G-patch domain 992 1033 IPR000467 GO:0003676
Vian1g01956 1069 SMART G-patch_5 989 1035 IPR000467 GO:0003676
Vian1g01956 1069 SMART rrm1_1 472 547 IPR000504 GO:0003723
Vian1g01956 1069 SMART rrm1_1 315 390 IPR000504 GO:0003723
Vian1g01956 1069 PANTHER RNA-BINDING PROTEIN 205 1064 - -
Vian1g01956 1069 MobiDBLite consensus disorder prediction 130 149 - -
Vian1g01956 1069 Gene3D - 455 576 IPR012677 -
Vian1g01956 1069 MobiDBLite consensus disorder prediction 256 308 - -
Vian1g01956 1069 Gene3D - 414 446 - -
Vian1g01956 1069 ProSiteProfiles G-patch domain profile. 991 1037 IPR000467 GO:0003676
Vian1g01956 1069 MobiDBLite consensus disorder prediction 163 228 - -
Vian1g01956 1069 ProSitePatterns Zinc finger RanBP2-type signature. 420 439 IPR001876 -
Vian1g01956 1069 MobiDBLite consensus disorder prediction 662 688 - -
Vian1g01956 1069 CDD OCRE_SUA_like 610 662 IPR035623 -
Vian1g01956 1069 SUPERFAMILY RNA-binding domain, RBD 469 558 IPR035979 GO:0003676
Vian1g01956 1069 ProSiteProfiles Zinc finger RanBP2 type profile. 416 445 IPR001876 -
Vian1g01956 1069 Gene3D - 294 401 IPR012677 -
Vian1g01956 1069 SUPERFAMILY Ran binding protein zinc finger-like 411 446 IPR036443 -
Vian1g01956 1069 SUPERFAMILY RNA-binding domain, RBD 305 399 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01956 Vian-Chr1 23271340 23278722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01956 313 535 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.41e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01956 K13094 - gmx:100787998 1765.36