Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01953 ATGCAAACACAGCTGGTTAACGAAGCTTTCGAGGGTGCAGAAAAGGACCTTGTAAAGTGCAGCTGTTTTTCTCATCAAAGTTTGTTTGTTGTGGGAACTGCTGTAGACTCAGAAAAGATTTGCCGACTCTTGGTGTTCAATCATTTGGAAGATGAGTTGCGTGGAATTTCCTTAACTGAGTATGGTTTACTTGTCAGGCTGTTAATCTGGGAAGATCACTACTATGAACCCTTGCCATCTCCTTTCCCTCCACGTACTGTTGGGGTGTCTAATTTTCCATACCGAGACGGGGAAGGGTGCTGGTTTTCTTCTGAGTCTCAACTGGGGATTCAGGAGGAGGACAGAGTCGGTGGATTGATTAACAAAATGATGTTGAATAATTCAGTCAGTACTGCTGGAGAAGGGATGGTTGGACGGGCAACATTTACAGGAAACTATCAGTGGATTCTTATGAACAATTTCAGTGGAGATGCATATCCACCAGAGGTATATTCTAAGTTGCATTACCAATTTTCTGCTGGAATGTAG 528 0.4318 MQTQLVNEAFEGAEKDLVKCSCFSHQSLFVVGTAVDSEKICRLLVFNHLEDELRGISLTEYGLLVRLLIWEDHYYEPLPSPFPPRTVGVSNFPYRDGEGCWFSSESQLGIQEEDRVGGLINKMMLNNSVSTAGEGMVGRATFTGNYQWILMNNFSGDAYPPEVYSKLHYQFSAGM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01953 175 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 66 175 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01953 Vian-Chr1 23230495 23234469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01953 67 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 42.202 6.92e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01953 - - var:108338716 244.973