Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01940 ATGGGTCTCTGCTTCTCCGGTGTTCCATCACTTCATTCCTCTTCACTCAACCGCCCTCACTATCCAGGTTCATCAGACATTCACGGCAGCAACGTCGAGTTCTCCGGAACCACCACAACCACCACGGTCAGAAAGAGTAGGTTTTCCGTGAGAGAAGGCATAGACAGCGAATGCTCTCCTCTTCCTTTTCCCGGTGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACAGGGTATTTTAAATCCGACAGATTGGTTGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCATGCTTTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTCTCAAGGGTTTTCAGAGTGGCAGTCTGAGATAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGGCCAGGTTATTGGGGTACTGTTGGGACGAAGATCAGTTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTCGAGCGTCATCTCTTCGAAAGAAATCATGAACCACTTTCGTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGCCATATTCAGAAATTTCAACACCTCAAATGTACTGCTCGACGGGAATTACAATGCAAAAATAGCAGACTTTGGGTTGGCTAAAGGGCTTCCTGGGGAACAATCACTTGAAAAAACCCTGGGCATCTATGGTAATGCTGCACCAGAATATATGGCTACAGGGAAGTTGTATACGAAGAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTGACAGGCATGAGAGCATTTGACAGAAGAAGGCCATCAGGGCAGAAGGATCTGGTTGAATGGAGCAAGCCCTGTCTCTCTTCCAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCAAAACTTGCTCTAAAATGCCTAAAGGTTGATCCTAATCGACGTCCTTCAATGAAAGAAGTTCTTGAGAGATTGGAAGCCATTGAAGATGTCCATGGAAGATACCCAACTTATATTCGTAATTTTTTTTCTTAA 1152 0.4497 MGLCFSGVPSLHSSSLNRPHYPGSSDIHGSNVEFSGTTTTTTVRKSRFSVREGIDSECSPLPFPGGQILKWPELKVFSFEELKSATGYFKSDRLVGGFGRVYKGWLDENTLTPAKPCFGVEVAIKMFNPESSQGFSEWQSEINVLGRLSHPNVARLLGYCWDEDQFLLVYEFMPKGSFERHLFERNHEPLSWNTRLKIVIGAARGLAFLHANENKAIFRNFNTSNVLLDGNYNAKIADFGLAKGLPGEQSLEKTLGIYGNAAPEYMATGKLYTKSDVYGFGVVLLEILTGMRAFDRRRPSGQKDLVEWSKPCLSSKKKLKTIMDGKIEGQYSPKAALQAAKLALKCLKVDPNRRPSMKEVLERLEAIEDVHGRYPTYIRNFFS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01940 383 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 173 374 - -
Vian1g01940 383 ProSiteProfiles Protein kinase domain profile. 87 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01940 383 Gene3D Transferase(Phosphotransferase) domain 1 173 375 - -
Vian1g01940 383 PANTHER OS01G0588500 PROTEIN-RELATED 43 367 - -
Vian1g01940 383 Pfam Protein tyrosine and serine/threonine kinase 96 364 IPR001245 GO:0004672|GO:0006468
Vian1g01940 383 SUPERFAMILY Protein kinase-like (PK-like) 70 370 IPR011009 -
Vian1g01940 383 Gene3D Phosphorylase Kinase; domain 1 67 172 - -
Vian1g01940 383 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01940 Vian-Chr1 23118854 23121085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01940 74 364 Receptor kinase-like Gene Family AT3G58690 43.046 1.02e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian1g01940 PK_Tyr_Ser-Thr 6.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01940 - - vum:124825635 532.332