Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01939 ATGAGTGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTTCCGTTGGCTGTGGAAGAAGTTTTGGCTGAAGCACAGGTTGAATCAGAAGTTTTGGCTGCTCCTTTGTCCGTTAGGGATACTTCAAATCATGCTGAAAATGGGAAGGTAGAGGCAGAGGCACCTCTGGAGGATAGAATTGTGAAACCAGAAGCCAATTCAGAGTGCATTCCGCAACAAGATGTCCTAAATAGTCAAAATACAATAGAGTCGATCCCTGTAATGGAAAATGTTCCGGTTTTAAATAAAACTGAAGGTGAAAATGCATTAGATGTGAAGAGCAAAGTAGAAGAACTTCCTCAGAGTGATAAGGACGTAGCGAATGATTCTAATGTTTGTCAAAACAATGCTGATCCTGCTGAGATGACTGTGGAGGTGAAGCCCAAAGCTTTCGAAGCGGCTGAAAGTAAAACTTGCAATAATGGGGACTCCAACTCCGCACACCCCATTCATAACGAACCTAAAACGCCTCATGTTGTTCAGACCGATATAAGAGCTGAAGTTAAGAGTGGATTAGACGATGAGAATAAGTATAATGAAAGGCAGGCTGCTGTTGCAAATGCAGATAATGGAAACTTGATCTCACCGAACTTGTATTTTCTGGATCCTGAGTATTCATACGATGGTAATGAGTCGGGAACAGAAGATGAGCAGTCAGCTTTTATGAAGGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGCTATGGAGATCTGTTAACAGACTGGGCGGCTATGATAAGGTCACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTAAATGTGCCTATTACTTCTAATTCAGAGCCAATGAATATTGAAAATCAGTGTGTCCAAGGATTAGCTTCATCAGGTAGGGCACGTAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCACAACGTCTTCTGGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAGGAGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCATCAGACATGGTGAATGCAGTCAAAGTTGCTCACAGTAATAAACCATCTAAACCACAACTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTGGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCCTGGTCATAAGCGGTGAGCCTGAACATTCTGACAATCCATGGGGGGTCACACCTTTCAAGAAGGTTGTGAGTTTGCCTTCAAGAATTGATACTCATCAGACTTCTGCTGTGGTTACTTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAG 1584 0.4274 MSDTKENEEAGQNVPLAVEEVLAEAQVESEVLAAPLSVRDTSNHAENGKVEAEAPLEDRIVKPEANSECIPQQDVLNSQNTIESIPVMENVPVLNKTEGENALDVKSKVEELPQSDKDVANDSNVCQNNADPAEMTVEVKPKAFEAAESKTCNNGDSNSAHPIHNEPKTPHVVQTDIRAEVKSGLDDENKYNERQAAVANADNGNLISPNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPMNIENQCVQGLASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRSSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSNKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01939 527 SUPERFAMILY HSP20-like chaperones 436 523 IPR008978 -
Vian1g01939 527 CDD ARID 230 315 - -
Vian1g01939 527 ProSiteProfiles ARID domain profile. 228 319 IPR001606 GO:0003677
Vian1g01939 527 FunFam AT-rich interactive domain-containing protein 3 419 527 - -
Vian1g01939 527 Pfam ARID/BRIGHT DNA binding domain 231 315 IPR001606 GO:0003677
Vian1g01939 527 Gene3D - 228 326 IPR036431 GO:0003677
Vian1g01939 527 CDD ACD_sHsps_p23-like 446 522 - -
Vian1g01939 527 SMART bright_3 229 320 IPR001606 GO:0003677
Vian1g01939 527 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 88 526 IPR045147 GO:0006357
Vian1g01939 527 SMART ARID_2 225 315 - -
Vian1g01939 527 SUPERFAMILY ARID-like 223 330 IPR036431 GO:0003677
Vian1g01939 527 FunFam AT-rich interactive domain-containing protein 3 228 327 - -
Vian1g01939 527 Pfam Hsp20/alpha crystallin family 444 526 IPR002068 -
Vian1g01939 527 Gene3D - 389 527 IPR008978 -
Vian1g01939 527 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 427 527 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01939 Vian-Chr1 23100040 23108413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01939 101 525 ARID Transcription Factor Family AT1G76510 49.649 5.56e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian1g01939 HSP20 4.9e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01939 - - gmx:100803374 831.632