Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01930 ATGACACGCGCCCTCAGACTCCTCCAGTCCCAAGCGGCGCCACCTCCTGATGCTGCCGCCGTCGAGTCCGACTTCGTCGTCATCCTGGCGGCGCTCCTCTGCGCCCTCATTTGCGTGGTGGGCCTCGTCGCCATCGCGCGCTGCGCCTGGCTCCGTCGGGCAACATCTTCCGTCGGCGGCGGTGGATCTCCGCCGGCGCCGGCGAACAAGGGACTTAAGAAGAGAGTGGTGAATTCATTGCCGAAGTTTACGTACGCCGGCGAAGGTGATCGCTGCAAGTGGTCGGAGTGCCCGATCTGCCTTAATGAATTTTCCGGCGGTGACGAGGTCCGTGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGCGTGCGTGGACACGTGGCTCTCTTCGCACTCGTCGTGCCCCTCGTGCCGCGCGCCTTTCGTAGTCGCCCGATGCCAGAAGTGCGGCCACTTCCCGGCGGTCGCAGCCGAATCCAGCGAACCGGAGACGAAACCCGGTGGCGGCTGCAATGCCGATGATAATCGTAATGTAATTGTTAACCACGGGTTTAGTAATTACGGTTTCTTGCCATGA 579 0.6269 MTRALRLLQSQAAPPPDAAAVESDFVVILAALLCALICVVGLVAIARCAWLRRATSSVGGGGSPPAPANKGLKKRVVNSLPKFTYAGEGDRCKWSECPICLNEFSGGDEVRVLPQCGHGFHVACVDTWLSSHSSCPSCRAPFVVARCQKCGHFPAVAAESSEPETKPGGGCNADDNRNVIVNHGFSNYGFLP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01930 192 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 151 - -
Vian1g01930 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 149 IPR013083 -
Vian1g01930 192 SUPERFAMILY RING/U-box 79 145 - -
Vian1g01930 192 CDD RING-H2_EL5-like 96 139 - -
Vian1g01930 192 Pfam Ring finger domain 96 139 IPR001841 -
Vian1g01930 192 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vian1g01930 192 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01930 Vian-Chr1 22989659 22990237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01930 1 150 C3H Transcription Factor Family AT1G20823 60.366 1.05e-59 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01930 - - gmx:100786769 280.026