Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01924 ATGAAGTTTCTTCCTCTTCGTTTTTCCTTTCTTTTTGCCTTCCTAATCGCGTTCAGCCTCGTCCAAACCTCAGCAACAACGCTTCCCAAACATCACAAGAATGAAGAAAGCGATGGGCATAGTAGACTTCATCGACCCTCTTCACGATCCCTTCTGTCTTTTCCACTTAGGGTTGCAAGGACGGCACTGGTTGTGACCCTAGATGGGACTATGTATTTGGTGGACAACTCTCCTGGTTCCATGAAGGTGATATGGTCATTCTCTACAGGATCGCCCATCTACCAATCGTACAGAGCTCCCGTAGAACGGGATACTGATAAAGAAAATGCATCTGCAACACTAATTAGTGGATTCGTGGAATGTGGGGATGACTGGTCATTGTACATGCACGACAGACACTTTGGTAAAATGAGAATATCAGAATCTATAGCAGAATATGTAGCTCGTACTCCTACCCTTTCAGATGATGGAGCAGTGACACTTGGATCTAAAAGAAGCACTTTGTTTGAAGTTGATGCTAAAACTGGATCAATCATTCAAGTCCATGCGATGCCTGATCCTGTTAAACCTTGGAGTGATGGGAGGCAAAATGTTACAAATAGGGATCTTGCTGATCCTGTGAAACTAAATTCACCACAGCTGCTGCTTAAGATTTTTAGGACAGATTATTCCCTTCAATCTGTTAGTCCGAGCTCAGAAATAGTTTTGTGGACTATGGCATTAGCTGAATTTCAGGCTGTATTATTATGCCAACATTCCTCTTCTGATATAGAGGATGAATATGTTTCTGATAGTGGCCTCAATTTCACCATGCCATACCCCTGTCAAGAGATACGACAAGTCTTCCGCCTGAAAAAGAATTTTCTATTTGAACCTTCACTAATGCTTCCTTTGCAGCCAAATATTGATAGATTATTCAATAGTGACAATGATAATACGATGCTCCCTCAACCTCTCATCAAGATTACTACACCAAGGGAAGTTTATTTGAACAGGACAATTGAATGGCCAACTCCATTACCTCTTGTATTGTTTACCATCTTTCTGTTGGTAATTTCACTCATCTATCCTCTAGTGATTAAGGATCAAGAAACACCGAAGGACCAAAATAGTGAGTCTGAATTAAAAAGTTCACCTGCTAAGAAAAAGAAAACACATAAATCAGGAAGGAAAAATATGTCTTCAGAGAATGAGAAGGTTCTGACAGAAAAAGATAATGATAGAGAAGTATGGAAGCACTTCAATCATGTTAATGAAAATGTTGATGGACGAAGGATTGGTAAATTATTTGTTTCGAACAAAGAGATTGCTAAGGGAAGCAATGGCACCATTGTGCTTGAGGGTATATACGAAGGTCGAGCAGTTGCTATCAAACGTCTTGTCAAGGCTCACAATGACATAGCTTTTAAAGAAATAGAAAACCTTATCATGTCTGATTGTCATCCAAATATTGTTCGATGGCATGGTGTGGAGAATGATAACGATTTTGTTTACCTTGCTTTGGAACGATGTACATGCAATTTAGATGATTTGGTTCAAATTTATTCAGATATATCAGTAAACTCTACGTTTAGGAAGGACCAAGGTATTGGATGTTTGATTAAGTCCCAAATGGATACGTGGAAGGATAGTACACAGTGTCTTTGGAAGGAAAATGGCTATCCATCTCCTCTATTACTAAAACTGATGAGGGACATTGTTTCCGGGGTCATTCATTTGCATGAATTAGGAATAATACATCGAGATATGAAACCACAAAATGTTCTAATAACCAAGGAAAGATCCTTATGTGCTAAACTTTCTGATATGGGAATTAGCAAATGTCTTCTTGAAAATATGTCTTCTCTGGGTAATAATGCAACTGGTGGTGGCAGTTCAGGTTGGCAAGCACCAGAACAACTTGTTCAAGGACGTCAAACACGGGCAGTAGATATATTCAGTTTAGGTTGCGTCTTCTTTTTCTGCATTACTCGGGGAAGACATCCATTTGGAGAACGTATTGAACGGGATATCAATATTTTGAAAAATCACATGGACCTTTTCTTAGTGGAGTTCATTCCTGAAGCCAAAGATCTTATTAGTCGTTTACTAAATCCTTACCCTGATCTAAGGCCAAAGGCGACTGAAGTGTTGTACCATCCTTTTTTCTGGAGTTCCGAGATGCGGCTTTCCTTTTTGCGTGACACCAGTGATAGGGTGGAAGTAGAAAATAGAGAGACTAGTTCTGATCTTTTGGTGACATTAGAAAGCATTGCCACAGATGCCTTGGGTGGAAAATGGGATGAAAGGATGGAACCAGCTTTCATTGCTAACATCGGTCATTATCGACGGTATAATTTCAACAGTGTTCGAGACTTGTTACGAGTTATGAGAAACAAACTAAATCATTACAGAGAATTGCCTCAAGAAATCCAGGAACTTGTAGGACCTGTTCCCGAAGGATTCTATGAATACTTTGCAAATAGATATCCAAGACTCTTGATTGAGGTGTATAAAGTTATACTTCATTATTGCAAGGAGGAAGAATGTTTCCAAAGATATTTTAGATGTGTTGATTAG 2559 0.3927 MKFLPLRFSFLFAFLIAFSLVQTSATTLPKHHKNEESDGHSRLHRPSSRSLLSFPLRVARTALVVTLDGTMYLVDNSPGSMKVIWSFSTGSPIYQSYRAPVERDTDKENASATLISGFVECGDDWSLYMHDRHFGKMRISESIAEYVARTPTLSDDGAVTLGSKRSTLFEVDAKTGSIIQVHAMPDPVKPWSDGRQNVTNRDLADPVKLNSPQLLLKIFRTDYSLQSVSPSSEIVLWTMALAEFQAVLLCQHSSSDIEDEYVSDSGLNFTMPYPCQEIRQVFRLKKNFLFEPSLMLPLQPNIDRLFNSDNDNTMLPQPLIKITTPREVYLNRTIEWPTPLPLVLFTIFLLVISLIYPLVIKDQETPKDQNSESELKSSPAKKKKTHKSGRKNMSSENEKVLTEKDNDREVWKHFNHVNENVDGRRIGKLFVSNKEIAKGSNGTIVLEGIYEGRAVAIKRLVKAHNDIAFKEIENLIMSDCHPNIVRWHGVENDNDFVYLALERCTCNLDDLVQIYSDISVNSTFRKDQGIGCLIKSQMDTWKDSTQCLWKENGYPSPLLLKLMRDIVSGVIHLHELGIIHRDMKPQNVLITKERSLCAKLSDMGISKCLLENMSSLGNNATGGGSSGWQAPEQLVQGRQTRAVDIFSLGCVFFFCITRGRHPFGERIERDINILKNHMDLFLVEFIPEAKDLISRLLNPYPDLRPKATEVLYHPFFWSSEMRLSFLRDTSDRVEVENRETSSDLLVTLESIATDALGGKWDERMEPAFIANIGHYRRYNFNSVRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFYEYFANRYPRLLIEVYKVILHYCKEEECFQRYFRCVD 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01924 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Vian1g01924 852 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 422 502 - -
Vian1g01924 852 Pfam Ribonuclease 2-5A 722 848 IPR010513 GO:0004540|GO:0006397
Vian1g01924 852 MobiDBLite consensus disorder prediction 366 403 - -
Vian1g01924 852 CDD RNase_Ire1 720 848 - -
Vian1g01924 852 Gene3D KEN domain 719 851 IPR038357 -
Vian1g01924 852 PANTHER IRE1-RELATED 138 850 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vian1g01924 852 Gene3D Phosphorylase Kinase; domain 1 412 502 - -
Vian1g01924 852 ProSiteProfiles Protein kinase domain profile. 430 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01924 852 SMART PGNneu 781 835 - -
Vian1g01924 852 ProSiteProfiles KEN domain profile. 719 850 IPR010513 GO:0004540|GO:0006397
Vian1g01924 852 SMART serkin_6 430 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01924 852 Pfam Protein kinase domain 432 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01924 852 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 541 718 - -
Vian1g01924 852 SUPERFAMILY Protein kinase-like (PK-like) 430 721 IPR011009 -
Vian1g01924 852 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 47 186 IPR011047 -
Vian1g01924 852 Gene3D Transferase(Phosphotransferase) domain 1 538 718 - -
Vian1g01924 852 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 720 852 - -
Vian1g01924 852 Gene3D - 36 257 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01924 Vian-Chr1 22851981 22906481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01924 452 715 MAP Kinase Kinase Kinase AT3G06030 27.240 1.13e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vian1g01924 Pkinase 4.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01924 K08852 - gmx:100788389 1338.55