Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01922 ATGTTCCCAGTAAAATATAACATGAGCAAAGTTTGGGTTCTTGCCCTTCTCATCCTCTACAGTGCCTTTCTCTCAAAAGGAACCGCCAATGTTTCTACAAAACCAAGTGCCGTTAATATCGGGGCAATTTTATCTTTCGACTCTATTGTTGGAAGAGTGGCTAAAGTTGCCATGCAAGCAGCTGTGGATGATGTAAATTCCAATGCAACCATTCTCAACGGAACTAAGCTTAATATCTCAATGTTTGACACCAAGTTATCCACTGGATTCCTGGGAATCATTGCTTCACTGAGGTTGATGGCGAGTGACACTGTGGCCATAATTGGTCCCCAGTACTCGGTCATGGCACATGTTATTTCACACATAGCAAACGAGATGCAAGTGCCTCTACTTTCATTTGCTGCCACAGACCCTACACTGACCTCAATGCAGTTCCCATATTTTGTGAGGACCACGCAAAGTGATCTGCATCAGATGGCTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTTCGTAGATGATGACCATGGAAGAAATGGAGTGGCTGCCTTAGGAGATAAGCTGGCAGAGAAAAAAGGTAAAATATCACACAAATTGCCCTTTAGGCCATGTAATATAACCCGAGAAGAAATAAACAGTGCATTAGTTAAGGTAGCAGCATTAATGGAATCAAGAGTAATAATCCTTCACATATACCCTTCTTTTGGTGTAGAAGTACTTCATGTGGCTCAATCACTTGGCATGATGCAAAGTGGTTATGTGTGGATAGCCACAGATTGGCTAACCACACTATTAGATTCTGACCCATCCCTGTTCACATCTCCAGCCATCATGAATGACATCCAAGGTGTTGTCACCTTGCGCATGCATACGCCAGATTCAGACATAAAGGACAAATTTATTTCTAGATGGACCAAACTGATCCAGAAAGAAAATCCTAATCAGAATCCTTTTGGATTAAACATCTTTGGTCTTTACGCGTATGACACTGTTTGGGCACTGGCTTATGCACTTGATGCACTTTCAAAGGATGGAGGAACTTTGTCGTTTTCAAATGATTCGAGAGTAATTAACATGTTAACTGGGGACATCCTTCACCTAGATGCTATGAGGGTCTTCGTCAATGGTAGCATGTTGCATAAAAAGATTTTAGAGTTGAACACAAGTGGTTTAACGGGCCAGATGATGTTTGACTCAGATGGAAATTTAATGCATCCATCGTATGAAATCATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGATACCTCTGGCCTCCACACTGAAGAAGCTACTATTCATTCCAATTCCAGTGAAAGACTATATGATGTCATCTGGCCAGGTCAAACAACTCAAACACCACGCGGTTGGAGTCTTGCCAGCAATGGAAGACAGTTGAGAATTGGGGTGATAGTTAGAGTTACATTCCCCGAGATTGTGTCAAGAATTGAGGGTACCAATAAGCTTAGTGGTTTTTGCATAGATGTGTTTACTGCTGCAATGAACTTGTTGCCTTACCCGACACCATTCGAGTTTATTCCATTTGGTGATGGTAAAACCAACCCGTCACATTCAGACTTTCTTCACATGGTCACAATTGGTGCATTCGATGGTGTGGTGGGGGACATGACCATTAGTACAAACCGAGCAAAGATAGTGGATTTTACACAGCCATACATTAACTCTGGGCTAGTTGTTGTGGCACCTGTCAAGAAGTTGAAATCCAGTGCTTGGGCTTTTCTCATACCATTCACTCCAATGATGTGGTCTGTGACAGGAATGTTCCTCTTGGTGGTGGGAGCTGTCGTGTGGACTTTAGAGCGTGGTACAAACGATCAATTTAGAGGCCCCGCAAGAAGACAAATTGTCACCATTATCTGGTTTAGCTTCTCAACCCTATTTTCAACACAGAAAGAGAAGACTGTCAGCACTCTTGGTCGTTTCGTACTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGTTATACTGCAAGCCTCACCTCCATCCTAACTGTGGAACACCTTTCATCCCAAGTCAAGGGAATTGAAAGCTTAATAGCAAGTAATGAACCCGTTGGCTACGTGAAGGATACATTTACTGAAAATTATATAACTGCGGAACTACACATGGACAGATCCAGGCTTGTTCCTCTGAACTCCATGTTAGAATATGAAAAAGCCTTAAAAGATGGACCAGGTGGTGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATATAGTATTGTTGGTAAAGAGTTCACCAAGAGTGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCCCTAGCAGTTGACATGTCAACTGCCATCCTAAAACTATCAGAGAGTGGTGATCTTCAGAGAATTCATGATAAATGGCTAACAGGAATGGCTTGCAGCTCAGAAGGCGCAAAAGAAAGCATTGATCGACTTGGGCTGAAAAGCTTTTGGGGGCTTTACTTGCTGAGTGGCATAGCCTGCTTCATTGGTCTCCTTTGCTATGTCATTAGATTGATCTACCGTTATAACAGGCACTCTAACAGTAACCTTGAAGGCTCATCATTCTCTTCTCATCTTCGATCGTTCCTTTCCTTTGCTAATAAAAAAGAAGCAGGACAAAAGGACAACTGCCCTTGTACAAAGGTAGTAGTGGATGAAGATGGATCTTAA 2739 0.4242 MFPVKYNMSKVWVLALLILYSAFLSKGTANVSTKPSAVNIGAILSFDSIVGRVAKVAMQAAVDDVNSNATILNGTKLNISMFDTKLSTGFLGIIASLRLMASDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSMQFPYFVRTTQSDLHQMAAVAEIVDHFQWRDVIAIFVDDDHGRNGVAALGDKLAEKKGKISHKLPFRPCNITREEINSALVKVAALMESRVIILHIYPSFGVEVLHVAQSLGMMQSGYVWIATDWLTTLLDSDPSLFTSPAIMNDIQGVVTLRMHTPDSDIKDKFISRWTKLIQKENPNQNPFGLNIFGLYAYDTVWALAYALDALSKDGGTLSFSNDSRVINMLTGDILHLDAMRVFVNGSMLHKKILELNTSGLTGQMMFDSDGNLMHPSYEIINVIGSGIRRIGYWSDTSGLHTEEATIHSNSSERLYDVIWPGQTTQTPRGWSLASNGRQLRIGVIVRVTFPEIVSRIEGTNKLSGFCIDVFTAAMNLLPYPTPFEFIPFGDGKTNPSHSDFLHMVTIGAFDGVVGDMTISTNRAKIVDFTQPYINSGLVVVAPVKKLKSSAWAFLIPFTPMMWSVTGMFLLVVGAVVWTLERGTNDQFRGPARRQIVTIIWFSFSTLFSTQKEKTVSTLGRFVLIIWLFVVLILNSSYTASLTSILTVEHLSSQVKGIESLIASNEPVGYVKDTFTENYITAELHMDRSRLVPLNSMLEYEKALKDGPGGGGVAAIIDERAYMELFLATRCEYSIVGKEFTKSGWGFGFPRESPLAVDMSTAILKLSESGDLQRIHDKWLTGMACSSEGAKESIDRLGLKSFWGLYLLSGIACFIGLLCYVIRLIYRYNRHSNSNLEGSSFSSHLRSFLSFANKKEAGQKDNCPCTKVVVDEDGS 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01922 912 Gene3D - 56 412 - -
Vian1g01922 912 FunFam Glutamate receptor 714 821 - -
Vian1g01922 912 Gene3D - 154 437 - -
Vian1g01922 912 SUPERFAMILY Periplasmic binding protein-like II 455 818 - -
Vian1g01922 912 FunFam Glutamate receptor 588 718 - -
Vian1g01922 912 FunFam Glutamate receptor 472 588 - -
Vian1g01922 912 Gene3D - 588 718 - -
Vian1g01922 912 Gene3D - 765 824 - -
Vian1g01922 912 FunFam Glutamate receptor 154 315 - -
Vian1g01922 912 CDD GluR_Plant 475 817 - -
Vian1g01922 912 SMART GluR_14 476 819 IPR001320 GO:0015276|GO:0016020
Vian1g01922 912 SUPERFAMILY Periplasmic binding protein-like I 35 468 IPR028082 -
Vian1g01922 912 Pfam Receptor family ligand binding region 56 422 IPR001828 -
Vian1g01922 912 Pfam Bacterial extracellular solute-binding proteins, family 3 493 818 IPR001638 -
Vian1g01922 912 Gene3D - 470 587 - -
Vian1g01922 912 Pfam Ligand-gated ion channel 819 850 IPR001320 GO:0015276|GO:0016020
Vian1g01922 912 CDD PBP1_GABAb_receptor_plant 39 437 IPR044440 -
Vian1g01922 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 245 268 - -
Vian1g01922 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 112 140 - -
Vian1g01922 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 51 67 - -
Vian1g01922 912 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 334 346 - -
Vian1g01922 912 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 873 IPR015683 -
Vian1g01922 912 PIRSF IGluLR_plant 7 910 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01922 Vian-Chr1 22829672 22833204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01922 8 899 Ion Channels AT1G42540 54.496 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01922 K05387 - gmx:100789442 1371.68