Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01921 ATGGAGCGTGAAACTGCTGCCATAATAGGTCCCCAGTACTCAGTAATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCAGCAACAGACCCTACGCTGACTTCACTGCAGTTCCCATATTTTGTTCGGACAACGCAGAGTGATCTGTATCAGATGACTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTACATCGATGATGATCATGGAAGAAATGGGGTGTCCGTTTTAGGGGATAAGCTAGCAGAGAAACGCGGTAAAATATCACACAAAGCACCACTTAATCCTGGTAACATTACTAGGGAAGAAATAAACAGTGCATTAGTTAAGATAGCTTTAATGCAATCAAGGGTAATAGTCCTTCATATATACCCTTCTTTTGGTCTAGATGTAATGCATGTGGCTCGGTCACTTGGCATGATGGTAAATGGGTATGCGTGGATAGCCACAGATTGGCTTTCTACATTATTAGATTCCAACCCATCATTGTTCACCACTCAATCCATAAATGACATCCAAGGTCTTATCACCTTGCGCATGTATACTCCCGAGTCAGAAACCAAAAGAAAATTTAGTTCTAGCTGGAACAAAGTGAGCAAGGAAAAGGATCCTGCTGAGGGTCCTTTCGCATTGAACACCTTTGGGTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTCGATGCGTTTTTCAGGAGTGGGGGAACATTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGGGGAAATTTTGAGCTTGATAGCATGGGAGTGTTTCTTGATGGTGAGAAGCTGCTTAAAAGAATTTTAGAGGTGAACAGAAGTGGTCTAACAGGGCAAATGATGTTTGGACAAGATGGAAACTTGGTGCATTCATCATACAAAGTAATTAATGTGATAGGCAATGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTACGGTGTCATCTGGCCTGGTCAAACGACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCTCTCAGCTTGTTGCCTTATTCCGTTCCCTACAAGTTTGTTTCATTTGGAGATGGTAAAACCAACCCATTAAATTCAGATCTTCTTCACATGATAACAGCCGGTGCCTTCGATGCTGTGGTGGGAGACATAACCATTACTACTAACCGAACCAAGATAGTGGACTTTACTCAGCCATATATTGAGTCCGGGCTAGTTGTTGTGGCTCCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTAACACCATTCAGTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCTTCCAGAAGACAATTTGTCACCATTATTTGGTTTAGCTTCTCAACCCTATTTTTTTCACATAGTAAGTGA 1647 0.4244 MERETAAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMTAVAEIVDHFQWRDVIAIYIDDDHGRNGVSVLGDKLAEKRGKISHKAPLNPGNITREEINSALVKIALMQSRVIVLHIYPSFGLDVMHVARSLGMMVNGYAWIATDWLSTLLDSNPSLFTTQSINDIQGLITLRMYTPESETKRKFSSSWNKVSKEKDPAEGPFALNTFGFYAYDTVWVLASALDAFFRSGGTLSFSNDSSLNMLRGGNFELDSMGVFLDGEKLLKRILEVNRSGLTGQMMFGQDGNLVHSSYKVINVIGNGIRRIGYWSETSGLHTGESPNHSISGDGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALSLLPYSVPYKFVSFGDGKTNPLNSDLLHMITAGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFSPMMWFVTGMFFLVVGAVVWILERRINDDFRGPSRRQFVTIIWFSFSTLFFSHSK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01921 548 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 7 541 IPR015683 -
Vian1g01921 548 FunFam Glutamate receptor 55 214 - -
Vian1g01921 548 Pfam Ligated ion channel L-glutamate- and glycine-binding site 391 476 IPR019594 GO:0004970|GO:0016020
Vian1g01921 548 SUPERFAMILY Periplasmic binding protein-like II 351 503 - -
Vian1g01921 548 SUPERFAMILY Periplasmic binding protein-like I 3 366 IPR028082 -
Vian1g01921 548 Gene3D - 1 310 - -
Vian1g01921 548 Pfam Receptor family ligand binding region 5 320 IPR001828 -
Vian1g01921 548 Gene3D - 375 485 - -
Vian1g01921 548 Gene3D - 55 335 - -
Vian1g01921 548 Gene3D - 486 548 - -
Vian1g01921 548 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian1g01921 548 PRINTS Metabotropic glutamate GPCR signature 477 499 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian1g01921 548 PRINTS Metabotropic glutamate GPCR signature 75 92 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian1g01921 548 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian1g01921 548 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vian1g01921 548 FunFam Glutamate receptor 370 486 - -
Vian1g01921 548 SMART GluR_14 376 539 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01921 Vian-Chr1 22818125 22819953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01921 1 548 Ion Channels AT1G42540 57.603 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01921 K05387 - gmx:100790502 967.222