Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01920 ATGGTTCCTTGCCATGCTTCATCAGGGCATTCAATATCAAGCAGCATTCGCATGCCTTACCCACAAAAAGATCTTACAGGACAATACTCCATGAGAAAGATTTGGCTTCTTGTCCTCCTCATCTTCTACCATGCCTTTCCTTCAAAGGGAATCAGCAGTGTTTCTACAAGACCAAGAACTGTTAACGTAGGCGCTCTCATGTCCTTCAATTCAACAGTTGGGAGAGTGGCTAAGGTTGCTATACAAGCTGCAGTGGATGATGTAAACTCAGATGTTACTATTCTTAATGGAACTGAGTTAAAGATTTTAATGTTGGACACCAAATTATCCACTGGGTTCCTGGGAATCGTTGACTCATTAAGATTGATGGAGAATGACACTGTGGCCATAATTGGTCCCCAGTTCTCCGTGATGGCTCATGTGATTTCACACATTGCAAATGAGATGCAAGTGCCTCTCCTATCATTTGCAGCCACGGACCCTACACTCACTTCACTGCAGTTCCCATATTTTGTTAGGACAACACAAAGTGATCTGTATCAGATGACTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTACATCGATGATGATCATGGAAGAAATGGGGTGTCCGCTTTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCACACAAAGCACCACTTAAGCCTGGTAACATTACTCGGGAAGATATAAACAGTGCATTAGTTAAGATAGCTCTAATGGAATCGAGGGTAATAGTCCTTCACATATACCCTTCTTTTGGTCTAGATGTGTTGAATGTGGCTCGTTCACTTGGCATGATGGGAAGTGGCTATGTGTGGATAGCCACAGATTGGCTTTCTACATTATTAGATTCAAACCCATCATTGTTCACCACTCAATCCATAAATGACATCCAAGGTCTTATCACCTTGCGCATGTATACCCCTGAGTCAGAAATCAAAAGAAAATTTAGTTCTAGCTGGAACAAAGTGAGCAAGGAAAAGGATCCTGCTGAGGGTCCTTTCGCATTGAACACCTTTGGGTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTCGATGCGTTTTTCGGGAGTGGGGGAACATTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGGGGAAGTTTTGAGCTTGATAGCATGGGAGTGTTTCTTGATGGTGAGAAGCTGCTTAAAAGAATTCTAGAGGTGAACAGAAGTGGTCTAACAGGGCAAATGATGTTTGGACAAGATGGAAACTTGGTGCATTCATCATATGAAGTAATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGCTGATGGACTCTATGGTGTCATCTGGCCTGGTCAAACGACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTTTGTCAAGAACCGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCTCTCAGCTTGTTGCCTTATCCCGTTCCCTACAAGTTTTTTTCATTTGGAGATGGTAAAACCAACCCACCAAATGCAAAACTTCTCAACAAGATCACTATTGGGGAGTTCGATGCAGTTGTGGGGGACATTACCATTACCACAAACAGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCGGGGCTAGTTGTTGTGGCACCTATAAGGAAGATGAAATCCAGAGAGAAAACTGTGAGCACCCTTGGTCGCTTAGTGCTGATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTACATTGCAAGCCTCACCTCCATCCTAACTGTGGAACAGCTCTCATCCTCAGTTAAGGGAATTGAAAGCTTAGCAACAAGCGATGAACGGATTGGTTTCCCCAGTGGCTCCTTTGCTGAAAATTATCTGACAGAGGAGCTGAACATACACAGATCAAGGCTTGTTCCTCTGAACTCCCCATCAGAATATGAAAAGGCCTTGAAAGATGGTCCTGCCAATGGAGGTGTCACTGCCATAATAGATGAACGTGCATACATGGAACTCTTCCTGGCTACCAGATGTGAATACGGTATTGTTGGGCAAGAGTTCACCAAGATGGGATGGGGCTTTGCCTTCCCAAGAGACTCTCCCTTGGCAATTGACATGTCAACTGCCATCTTAAAACTTTCGGAGAATGGTGATCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCATGTAGCTCAGAGGGTGCAAAACAAGGCATAGACAGACTTGAGCTAAAAAGCTTTTGGGGTCTGTTCCTACTTAGTGGAATAGCATGCTTCGTTGCTCTTCTTTGCTATGTTGCAAGGATGGTCTACCGATTTAGAAGACACTCCAACAGTAACTCCGAAGGCTCTTCACGCTCCGCTCGTCTTCGATCATTCTTTAACTTTGTGAATGAAAGAGAAGAGGAAGACAAACATATGTCAAAGAGAAAACGAACGGAAAAGGGATCAAGTGGAAGGGTGGCGCATGATGAAGAATTGGATGGCTCCACTGTTAGTGTCCATGTTCAAAATTATACCCGAGGCTAA 2679 0.4341 MVPCHASSGHSISSSIRMPYPQKDLTGQYSMRKIWLLVLLIFYHAFPSKGISSVSTRPRTVNVGALMSFNSTVGRVAKVAIQAAVDDVNSDVTILNGTELKILMLDTKLSTGFLGIVDSLRLMENDTVAIIGPQFSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMTAVAEIVDHFQWRDVIAIYIDDDHGRNGVSALGDKLAEKRGKISHKAPLKPGNITREDINSALVKIALMESRVIVLHIYPSFGLDVLNVARSLGMMGSGYVWIATDWLSTLLDSNPSLFTTQSINDIQGLITLRMYTPESEIKRKFSSSWNKVSKEKDPAEGPFALNTFGFYAYDTVWVLASALDAFFGSGGTLSFSNDSSLNMLRGGSFELDSMGVFLDGEKLLKRILEVNRSGLTGQMMFGQDGNLVHSSYEVINVIGSGIRRIGYWSETSGLHTGESPNHSISADGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFLSRTEGTEMFGGYCIDVFTAALSLLPYPVPYKFFSFGDGKTNPPNAKLLNKITIGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLATSDERIGFPSGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLSGIACFVALLCYVARMVYRFRRHSNSNSEGSSRSARLRSFFNFVNEREEEDKHMSKRKRTEKGSSGRVAHDEELDGSTVSVHVQNYTRG 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01920 892 FunFam Glutamate receptor 672 779 - -
Vian1g01920 892 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 135 163 - -
Vian1g01920 892 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 74 90 - -
Vian1g01920 892 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 355 367 - -
Vian1g01920 892 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 61 607 IPR015683 -
Vian1g01920 892 Gene3D - 79 432 - -
Vian1g01920 892 MobiDBLite consensus disorder prediction 851 880 - -
Vian1g01920 892 MobiDBLite consensus disorder prediction 851 881 - -
Vian1g01920 892 FunFam Glutamate receptor 492 608 - -
Vian1g01920 892 Pfam Receptor family ligand binding region 79 442 IPR001828 -
Vian1g01920 892 CDD GluR_Plant 495 775 - -
Vian1g01920 892 Gene3D - 177 457 - -
Vian1g01920 892 SMART AABind_6 496 778 IPR001638 -
Vian1g01920 892 Gene3D - 490 614 - -
Vian1g01920 892 Pfam Ligand-gated ion channel 777 808 IPR001320 GO:0015276|GO:0016020
Vian1g01920 892 Pfam Bacterial extracellular solute-binding proteins, family 3 555 776 IPR001638 -
Vian1g01920 892 Gene3D - 635 732 - -
Vian1g01920 892 CDD PBP1_GABAb_receptor_plant 62 457 IPR044440 -
Vian1g01920 892 Gene3D - 733 783 - -
Vian1g01920 892 SMART GluR_14 498 777 IPR001320 GO:0015276|GO:0016020
Vian1g01920 892 FunFam Glutamate receptor 177 337 - -
Vian1g01920 892 SUPERFAMILY Periplasmic binding protein-like II 473 777 - -
Vian1g01920 892 SUPERFAMILY Periplasmic binding protein-like I 57 488 IPR028082 -
Vian1g01920 892 PIRSF IGluLR_plant 30 608 IPR017103 -
Vian1g01920 892 PIRSF IGluLR_plant 603 890 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01920 Vian-Chr1 22801613 22805353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01920 35 862 Ion Channels AT3G51480 50.834 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01920 K05387 - gmx:100790502 1025.77