Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01918 ATGACATTATTACAGATTTGCGATTCATCTCTTTTGAATCCAATCCATGGCACCTATGGGTCCCGGTTTCCGATTCCACCGCATCAACGAAGAGCTGGTGGTGTTCTACCTGAACCTGAAGCGCAAGATCACCGGAAAGCTCTAATCCCCAATTTTCTTTCACTCTTTTTCTCTCTCAGCGATTCATCTCTCTTGAATCCAATCCATGGCACCTATGGGTCCCGGCTTCCGATTCCACCGGTTCTACCTGAACCTGAAGCGCAAGATCACCAGAAACCTGTCCCGATACGACACATCGCAGTGGTTGATGTCTACAAGCTCGAGCCTTGGGACCTTCCCCCTCTGTCGAAGCTGAAGACGAAGGACTTGGAATGGTACTTCTTCAGCGTGATGGACCGCAAGTATGGAAATGGCTCCAGGACCAACCGCGTCACCGAGAAGGCTACTGGAAAGGACCGCCTTGTGGCCCATGGCAACTGCACCGCGGGGATGAAGAAGACCCTCCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTATGACACTGACTCACCCATGAGGTATGTGGACATTGGGATTCCTGCCAACAACAAGGGCAAACACAGCATTGGGTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGAGTACCATTCGTCTTGGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACTAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACTGACTATAATCCTGGTGCTATTGCTGCTGATGGCCAGTGGCCCGGTACAATTGATCAATCGTGGACAGATGCAGTTCCACAACCTATTCCAACTGTACCTGGCATCAACTGGGGAGCCTCACCTTCTACAGATGCACCTGGATCGTCTCAGATACGTCCCCGTATTCTAAAGTCTCTCAAATTGGTCCTTAATTGTGAAAATTTAAATCAATTGAGACCTTCCCGTTAA 1014 0.4911 MTLLQICDSSLLNPIHGTYGSRFPIPPHQRRAGGVLPEPEAQDHRKALIPNFLSLFFSLSDSSLLNPIHGTYGSRLPIPPVLPEPEAQDHQKPVPIRHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSVMDRKYGNGSRTNRVTEKATGKDRLVAHGNCTAGMKKTLPIKEGALGNIPTIAFYDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRSTIRLGLKWDVMVDLFFYRELEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDAVPQPIPTVPGINWGASPSTDAPGSSQIRPRILKSLKLVLNCENLNQLRPSR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01918 337 Pfam No apical meristem (NAM) protein 91 170 IPR003441 GO:0003677|GO:0006355
Vian1g01918 337 PANTHER 40S RIBOSOMAL PROTEIN SA 169 302 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vian1g01918 337 ProSiteProfiles NAC domain profile. 65 220 IPR003441 GO:0003677|GO:0006355
Vian1g01918 337 Gene3D - 129 256 - -
Vian1g01918 337 SUPERFAMILY NAC domain 92 168 IPR036093 GO:0003677|GO:0006355
Vian1g01918 337 Pfam Ribosomal protein S2 165 218 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vian1g01918 337 SUPERFAMILY Ribosomal protein S2 163 236 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01918 Vian-Chr1 22777097 22781571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01918 169 297 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 65.909 6.50e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01918 K02998 - gmx:100805318 253.447