Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01914 ATGCCGAAGGTTAAAGCTGATGCTAAAGCTGCCGATAACAGGTTGAAGCGCAAGGGCGCTGGTGCTGGTAGGAAGCAATCAAAGAAAGCTGCTAAGGATCCTAATAAGCCGAAAAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAACATCCAACCAACAAATCTGTTGCTGTTGAAAAAGCACCCTTCATTGCTAGGGCTGAGAAGAAAAAAGAAGAGTATGAGAAGAGTATCTTGGCTTATAATAAGAAATTGGAAGGAAAAAATTCAGAGGAAGAAGAGTCTGACAAGTCGAAATCTGAAGTTAACGACGAGGAGGAAGACGAGGAGGATGATGAAGATGATGAGTGA 378 0.4286 MPKVKADAKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPTNKSVAVEKAPFIARAEKKKEEYEKSILAYNKKLEGKNSEEEESDKSKSEVNDEEEDEEDDEDDE 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01914 125 SUPERFAMILY HMG-box 28 95 IPR036910 -
Vian1g01914 125 MobiDBLite consensus disorder prediction 1 43 - -
Vian1g01914 125 Coils Coil 73 117 - -
Vian1g01914 125 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 124 IPR031061 -
Vian1g01914 125 MobiDBLite consensus disorder prediction 90 106 - -
Vian1g01914 125 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 91 IPR009071 -
Vian1g01914 125 MobiDBLite consensus disorder prediction 107 125 - -
Vian1g01914 125 Gene3D High mobility group box domain 20 68 IPR036910 -
Vian1g01914 125 SMART hmgende2 36 92 IPR009071 -
Vian1g01914 125 Pfam HMG (high mobility group) box 37 69 IPR009071 -
Vian1g01914 125 MobiDBLite consensus disorder prediction 1 19 - -
Vian1g01914 125 MobiDBLite consensus disorder prediction 90 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01914 Vian-Chr1 22709878 22710877 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vian1g01914 HMG_box 5.9e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01914 K25507 - gmx:100305957 154.451