Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01910 ATGGGTCTTTGCTTCTCCGGTGCTCCATCACTTCAATACTCTTCACTCAACCGCCCTCGTTATCCAGGCTCATCAGACATTCACGGCAGCAGCGTCGAGTTCTCCGAAACCATCACAACCACCGATATCAGAAAAAGTCAGTTTTCCGTGAGAGAAACCATCTACAGCGATTGCTCTCCTATTCCTTTTAACCATCGCCAACTTCTGAAATGGCCTGAGTTGAAGGTTTTCAGTTTTAAGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGCATGGTTGGATGAGAACACCTTCACCCCCGCCAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAACCACAAAAGTAATCGAGGGTTTTTACTGTGGCAGTCTGAGGTAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGATCAGGTTATTGGGGTACTGTTGGGACGAGGACGAGTTTCTTCTTGTGTATGAGTTCATGCCAAACGAAAGCTTTCACTATCATCTCTTCGAAAGAAATCATGAACCACTTTCGTGGAACACCCGGCTTAAAATAATTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGTCATATTCAGAGATTTCAAGTCCTCAAATATACTGCTGGACGGGAATTACAATGCAAAAATAGCAGACTTTGGGTTGGCTACATTGGGACCATCGGAGGGACAATCACATGTAAGTACCAGTATCATGGGCACCTTTGGTTATATTGCACCAGAATATATTACAACAGGGGACTTGTATGTGAAGAGTGATGTGTATGCATTTGGTGTAGTGCTTCTTGAAATACTTACAGGCATGAAGGCACATGACACAATAAGGTCAACAGGGCAGCAGAACCTGGTTGAATGGAGCAAGCCCTGTCTCTCTTCCGAAATAAAGTTGAAAACAATTATGGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTGCTCTAAAATGCCTAGAGCATGATCCTTATCAACGTCCTTCAATGGAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAGATAACCAGTGA 1131 0.4421 MGLCFSGAPSLQYSSLNRPRYPGSSDIHGSSVEFSETITTTDIRKSQFSVRETIYSDCSPIPFNHRQLLKWPELKVFSFKELKSATGNFKSDRLVGEGGFGRVYKAWLDENTFTPAKPGSGVEVAIKMFNHKSNRGFLLWQSEVNVLGRLSHPNVIRLLGYCWDEDEFLLVYEFMPNESFHYHLFERNHEPLSWNTRLKIIIGAARGLAFLHANENKVIFRDFKSSNILLDGNYNAKIADFGLATLGPSEGQSHVSTSIMGTFGYIAPEYITTGDLYVKSDVYAFGVVLLEILTGMKAHDTIRSTGQQNLVEWSKPCLSSEIKLKTIMDGKIEGQYSPKAALQAAQLALKCLEHDPYQRPSMEEVLEGLEAIEDNQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01910 376 ProSitePatterns Protein kinases ATP-binding region signature. 95 127 IPR017441 GO:0005524
Vian1g01910 376 SUPERFAMILY Protein kinase-like (PK-like) 63 367 IPR011009 -
Vian1g01910 376 Gene3D Transferase(Phosphotransferase) domain 1 175 376 - -
Vian1g01910 376 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 175 376 - -
Vian1g01910 376 Gene3D Phosphorylase Kinase; domain 1 73 174 - -
Vian1g01910 376 Pfam Protein tyrosine and serine/threonine kinase 91 368 IPR001245 GO:0004672|GO:0006468
Vian1g01910 376 PANTHER OS01G0588500 PROTEIN-RELATED 52 372 - -
Vian1g01910 376 ProSiteProfiles Protein kinase domain profile. 89 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01910 376 FunFam Serine/threonine-protein kinase BIK1 59 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01910 Vian-Chr1 22650702 22652943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01910 74 376 Receptor kinase-like Gene Family AT3G58690 45.631 1.38e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian1g01910 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01910 - - vum:124825635 608.986