Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01903 ATGGCAACCTCAACTTGTTGTGATGTTAGTGAAATAAGACATGATGTGTTCATCAGCTTCACAGGCATAGATGTCCGCAGAGGTCTTATTAGCCATTTGAAAAGAGAATTACATCGCAAACATATTGATGCCTATGTGGACGAGAGACTTGATAAAGGGGGTGAAATATCATCCTCACTTCTCAGAGCAATTGAAGGCTCAAAAATTTTATTGGTCGTATTCTCCAAACACTATGCTTCATCACATTGGTGCCTGGAAGAGCTTGCCAAAATGATTGAATGCATGGAAACAAATAAACAGATTGTCCTACCTGTTTTCTTCAATATAGATCCATCACACGTGCGACACCAATATGGAGATTATGGATATGCTTTAGCTGAACATGAAGAAGAGTTCAAGGAAAACATGCTCAAGGTACAAAGTTGGAGATCAGCTTTGAAAAAAGCTGGTCGTTTATCCGGATTTCATTATCCAACAAATTATGAGAATGAATCTGATCTTGTCGATGAAATTGTGGAAGACATTTCAGTAAAATTGAGCGAGTTATACCCAAGTGAATCAAATGGTCTTGTTGGAATTGATCAAAACGTTACACAGGTTCAGTCGTTACTGCGAGTAGAATCAAATGAAGTTCTTTTTGTTGGAATTTGGGGCATGGGTGGCATAGGTAAGACAACCATTGCTCGTGCTATATTTGATAAATGTTCTCTTCAGTATGATGGCTGCTGTTTCTTCAATGTAAGAGAAGAATTGGAACAGCATGGATTCAGCAATTTACGAGAGAGGCTCATTTATGAACTACTTGAAGGAGAAGGTCTCCATACAAACAAAGCAAGATTCTTTAGTTCTGCTCTAAGAATGCTGGGTCGGAAAAAAGTTATGGTAGTGCTTGATGATGTAAATACTTCTGAAGAATTAAGGTATCTGGTCACAAAACCAGTTTGCTTCGGTGCAGGGAGTAGGGTGATAATAACAAGTAGAGATCAGGACGTGCTTACAAGTGGAGGACTTGATCAAATTCATGAGGTCAAGGAAATGAAACCTCTTGATTCTCTCAAGCTCTTCTGTTTGATTGCCTTCAATGAAAGCCAACCCAAAATGGGATATGAAAAACTAACTGAAGAGGTGCTTAAAATCGCCCCGGGTAATCCCTTAGCCTTAAAAGTTTTAGGTGCTGAATTCCATTCCAGAAGTGCTATAAACACATGGAACTGTGCATTAAGCAAATTCAAGAAGTATCCCAATGAGAAAATTCAAAGTGTGTTAAGATTCAGTTATGATGGACTGCATGAAGTAGAGAAAAAGGCCTTCCTAGATATTGCATTCTTTTTCCAAGAAGACACCAAAGCCTATGTTATAGAGCAACTAGATGCATGGGGACTTCATGGAGCTAGTGGAGTGGAGGTTCTCCAACGGAAAGCTCTTATAACAGTTTCAAATGAGAATATAATACAAATGCATGACCTGATACGACAAATGGGTTGCGAAATAGTTCGTCAAGAATGTATTACACATCCAGGAAGACGCACCCGATTGAGGGATAAAGAGGAAGTATACAAAGTATTGAGGAATAAGCTGGGAAGCGATAAGGTGGAGGGCATGCAAGTAGATGTGTTTCGAATTAAAGATTTGTCGCTGAAAGTAGGAACTTTTAAAAAGATGCCTTGTCTGAGATTTCTGAAATTTTATCTCCCCGATGATAATCTTTTCCTGCCGCCAAACCCGGATGGAACGTTAAGGTATGAAAAACGTCACTTCCCATTGCTTTTATCTGCATGGTGCAAAGACCTCATGAGAGTTGCATGTGAGATTCAGATAAAATGTGTTGACTACGTTTATTTTGATGGTTACTCACATTCTTCCCTAACATCGACGCTAAGAAACCGTGGAAGGGAAATACGATCGTCGACCTCGATATCATTGACCGAACTAACTGGTTCCCTCGGGGATCTTGAATGCTCAGATATGCTTGATCAACAATTTAAGATTCTGCCTGATGGGCTACTTTGTCTGAGATCAACTTATTATCTTAAGCTTTCTAAGAGCACGGGGCAAGACAGTGGAAAACCCAAGTTGCACGTTCTGTTTGACAGCTTAAGGTTTTATGAACGAATATCTGTGGGCAAGTTGAAGAACTCGGACATCGAGGGTAATCGGATGTTGTTTCTTTATTTTGCAGGTTTTAACTTTCTATTTAGTCCCTTTCTTCTTAGGAGACCTTGGTTTCATTTCCTCTTTTCTTTTCGTTTTGCATTCTTCTGCACTTTATTTTTGTATCTTTCATGGAAAATGATCCTTTGA 2301 0.3929 MATSTCCDVSEIRHDVFISFTGIDVRRGLISHLKRELHRKHIDAYVDERLDKGGEISSSLLRAIEGSKILLVVFSKHYASSHWCLEELAKMIECMETNKQIVLPVFFNIDPSHVRHQYGDYGYALAEHEEEFKENMLKVQSWRSALKKAGRLSGFHYPTNYENESDLVDEIVEDISVKLSELYPSESNGLVGIDQNVTQVQSLLRVESNEVLFVGIWGMGGIGKTTIARAIFDKCSLQYDGCCFFNVREELEQHGFSNLRERLIYELLEGEGLHTNKARFFSSALRMLGRKKVMVVLDDVNTSEELRYLVTKPVCFGAGSRVIITSRDQDVLTSGGLDQIHEVKEMKPLDSLKLFCLIAFNESQPKMGYEKLTEEVLKIAPGNPLALKVLGAEFHSRSAINTWNCALSKFKKYPNEKIQSVLRFSYDGLHEVEKKAFLDIAFFFQEDTKAYVIEQLDAWGLHGASGVEVLQRKALITVSNENIIQMHDLIRQMGCEIVRQECITHPGRRTRLRDKEEVYKVLRNKLGSDKVEGMQVDVFRIKDLSLKVGTFKKMPCLRFLKFYLPDDNLFLPPNPDGTLRYEKRHFPLLLSAWCKDLMRVACEIQIKCVDYVYFDGYSHSSLTSTLRNRGREIRSSTSISLTELTGSLGDLECSDMLDQQFKILPDGLLCLRSTYYLKLSKSTGQDSGKPKLHVLFDSLRFYERISVGKLKNSDIEGNRMLFLYFAGFNFLFSPFLLRRPWFHFLFSFRFAFFCTLFLYLSWKMIL 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01903 766 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vian1g01903 766 PRINTS Disease resistance protein signature 213 228 - -
Vian1g01903 766 PRINTS Disease resistance protein signature 705 721 - -
Vian1g01903 766 PRINTS Disease resistance protein signature 380 394 - -
Vian1g01903 766 PRINTS Disease resistance protein signature 287 301 - -
Vian1g01903 766 Pfam NB-ARC domain 195 427 IPR002182 GO:0043531
Vian1g01903 766 SMART till_3 13 152 IPR000157 GO:0007165
Vian1g01903 766 Gene3D - 180 339 IPR027417 -
Vian1g01903 766 Gene3D - 8 179 IPR035897 -
Vian1g01903 766 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 680 IPR044974 GO:0006952
Vian1g01903 766 Pfam TIR domain 14 191 IPR000157 GO:0007165
Vian1g01903 766 Coils Coil 766 766 - -
Vian1g01903 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 440 IPR027417 -
Vian1g01903 766 Gene3D - 346 430 IPR042197 -
Vian1g01903 766 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 181 - -
Vian1g01903 766 SUPERFAMILY "Winged helix" DNA-binding domain 417 521 IPR036390 -
Vian1g01903 766 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 155 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01903 Vian-Chr1 22567576 22570184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01903 14 563 WRKY Transcription Factor Family AT4G12020 32.316 2.94e-65 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01903 - - vum:124821432 1048.11