LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g01883	ATGAGTGCAAGTTCTTATGGTTTCCCTATCCCAGCATCGCTTTTGCCAAGCGATGCATCTCCCGAGTGGAACAACAAAGCAGATAATGCATGGCAACTAACGGCAGCAACCTTAGTGGGCCTTCAGAGCGTTCCTGGGCTTGTGATCCTGTACGGCAGCATGGTTAAGAGAAAATGGGCTGTGAACTCAGCCTTCATGGCCCTGTACGCCTTTGCTTGTGTGCTCATTTGTTGGGTTTCATGGGCCCATGGCATGGCATTTGGGACTGAGCTTTTGCCATTCGTGGGAAAGCCCAACCACGCTCTGAGTGGGAAGTTTCTGCTTGCGAAGTCAAGTGCTGGGTACTTTCCAATGGCTGACTTCGTGTTCTATCAATTTGCTTTTGCCGCAATCACTGTTGTGTTGCTTGCAGGGTCTTTGCTGGGGAGAATGAACTTCTATGCGTGGATGTTGTTTGTTCCTTTGTGGCTTACCTTCTCTTACACTGTTGGTGCATTCAGCATATGGGACAAATATGGCTTCCTTGAGGGAAAAATAATAGATTATGCTGGTGGCTTCGTCATTCATTTATCTTCTGGCATTGCAGGTTTCACAGCTGCTTATTGGGTTGGTCCAAGAATTTCATACGACAGGCAAAACTTTCCACCAAACAACATAATTCACGTGCTGGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTTAACGGTGGAGCTACTTTCCGAGTGGGAGAAATTGCATCGTTGGCGATCTTCAACACCCATCTATGTACTGCAACAAGCCTACTGGTTTGGCTTACATTGGACATGATTGTATATACCAAGAGCTCAGTCATAGGAGCCGTACAGGGAATGATCACTGGCCTCGTCTGCATCACACCAGGTGCAGAAGGCTTGGTGGATTCATGGGCAGCAGTATTGATGGGAGCTTTGTCTGGTTCCATTCCATGGTACACTATGATGGTGTTACACAAAAAATCAGCATTCTTTCAGAGTGTGGATGATACATTAGGAGTCTTTCACACTCATGCTGTGGCTGGTCTTCTTGGGGGTCTTCTTTCTGGCGTGTTTGCAAAACCCAGGCTTCTAAGAATAATGTATCGCGATGATCAGTATGGCCCAGGATTAATCTATAGTTTTTCTAAGGGGGAATCAGTGAGTGAAGGGTTTAGGCAAATATGGTACCAGTTACTTGGAGCAGGTTTTATTATTGTTTGGAATGTAATTGTTACTAGCCTGGTTTGTGTTCTTATAAGCCACATTGTGGATCTTAGGATGCAAGAAGAGGAGCTTGAGGTTGGTGATGATGCTGCTCATGGAGAAGAAGCATACGCATTGTGGGGTGATGGAGAGAGAATGAGAGTTCCTCTTCGTCTCCATATAAGTCCAACCATTCCTTCTCTGTGCCGGCGAAGGTTTTCTATTCCTCTCACCAGGAACCAAGAAGAGTAG	1455	0.4625	MSASSYGFPIPASLLPSDASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFACVLICWVSWAHGMAFGTELLPFVGKPNHALSGKFLLAKSSAGYFPMADFVFYQFAFAAITVVLLAGSLLGRMNFYAWMLFVPLWLTFSYTVGAFSIWDKYGFLEGKIIDYAGGFVIHLSSGIAGFTAAYWVGPRISYDRQNFPPNNIIHVLGGAGFLWMGWTGFNGGATFRVGEIASLAIFNTHLCTATSLLVWLTLDMIVYTKSSVIGAVQGMITGLVCITPGAEGLVDSWAAVLMGALSGSIPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGLLSGVFAKPRLLRIMYRDDQYGPGLIYSFSKGESVSEGFRQIWYQLLGAGFIIVWNVIVTSLVCVLISHIVDLRMQEEELEVGDDAAHGEEAYALWGDGERMRVPLRLHISPTIPSLCRRRFSIPLTRNQEE	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g01883	484	PRINTS	Rhesus blood group protein signature	125	141	IPR002229	GO:0005886
	Vian1g01883	484	PRINTS	Rhesus blood group protein signature	345	361	IPR002229	GO:0005886
	Vian1g01883	484	PRINTS	Rhesus blood group protein signature	220	238	IPR002229	GO:0005886
	Vian1g01883	484	PRINTS	Rhesus blood group protein signature	251	273	IPR002229	GO:0005886
	Vian1g01883	484	SUPERFAMILY	Ammonium transporter	23	426	-	-
	Vian1g01883	484	PANTHER	AMMONIUM TRANSPORTER MEP2	13	454	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vian1g01883	484	ProSitePatterns	Ammonium transporters signature.	181	206	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Vian1g01883	484	Pfam	Ammonium Transporter Family	30	445	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Vian1g01883	484	FunFam	Ammonium transporter	12	448	-	-
	Vian1g01883	484	NCBIfam	ammonium transporter	28	445	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vian1g01883	484	Gene3D	Ammonium transporter AmtB like domains	15	448	IPR029020	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g01883	Vian-Chr1	22286822	22288529	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g01883	118	453	Inorganic Solute Cotransporters	AT2G38290	58.631	1.90e-131	383

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g01883	K03320		-	gmx:100815876	876.315