Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01877 ATGGAGATATCAGTGCATTGCCAGTCTGGGTGTCTCAGCCTCAATGACGAAGTGGATACGTCTATGATCGGACCTTTTATTCAAGAAGCTCTGGATGGACTTGAGTTTGCAAAGGGAGATGCTGCCGCGTTCTTGGCGGACTTGCGGATGGTCTCTCCAAGCGTGGTGGTTTTGGTGGATAGCGAGGGATGGGCAGATATGACTACACTAGCAGCAGCCTCGTCGTTCCGACGCGGCGTCGTGAGCAGTTTGAAGTACTACTCGATGATTTTGGAGTTGCTGGATGTGTCGACGGCTGGGGGAGGAGGGGAGTGGGTGAGGAGAATCGGGATGATGCATCTACGACCGAAGGTTGGGTGGAAGATGGAAGGAAGAGACGAGGGAGAGAGAGGGAGAAAAGCTGAGAAACACTGA 414 0.5314 MEISVHCQSGCLSLNDEVDTSMIGPFIQEALDGLEFAKGDAAAFLADLRMVSPSVVVLVDSEGWADMTTLAAASSFRRGVVSSLKYYSMILELLDVSTAGGGGEWVRRIGMMHLRPKVGWKMEGRDEGERGRKAEKH 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01877 137 Pfam GRAS domain family 41 100 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01877 Vian-Chr1 22237576 22238313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01877 22 123 GRAS Transcription Factor Family AT4G36710 42.718 3.22e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian1g01877 GRAS 2e-06 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01877 - - gmx:100807470 120.553