Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01876 ATGGAGTCTGAGCCAAATCAATGCCCTTTGACGGGTTCCTTGGGGAATTTCGCTGAGAAGGTCAAAAGGGTTGGTACCCTCTTCGTCTCTGCCATCGTTGGAAACATCTTATCTGCGATCTTGACCTTCTGCTTTGCATTAGGTCAAGAGACAGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCCATTGTTCTTTGGAAATCTGACGATTCTGGAATTGGGTGTGCCTTATACTTGATTGATGTTTTTGCAAGCCTGTTGAGTGGAAGACTAGTGCGTGAAAGAATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGCCAGATGGGTGCTGTTGAAATAAGCTTTGATGAGGTTCAAAACCTCTTTGATATTGGTGTGGCCAAAGGCTTACCGAGAGACTCAGTTGAAAAGATCCCAACAATCACAATTACAAGTGACAACAGTGTTGATGCTTCTGGGGATAGAGTTTCATGTTCTGTTTGCCTCCAGGACTTTCAGATTGGAGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATTGACAAGTGGCTGATCAAGCATGCTTCTTGTCCATTATGCAGAAGGGATCTGTAA 657 0.4475 MESEPNQCPLTGSLGNFAEKVKRVGTLFVSAIVGNILSAILTFCFALGQETESGFIRGAAVGAISGAVFSIEVFESSIVLWKSDDSGIGCALYLIDVFASLLSGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGVAKGLPRDSVEKIPTITITSDNSVDASGDRVSCSVCLQDFQIGETGRSLPHCHHMFHLPCIDKWLIKHASCPLCRRDL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01876 218 SUPERFAMILY RING/U-box 172 218 - -
Vian1g01876 218 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 217 IPR044523 -
Vian1g01876 218 SMART ring_2 173 214 IPR001841 -
Vian1g01876 218 CDD RING-H2_NIPL1-like 172 215 - -
Vian1g01876 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 218 IPR013083 -
Vian1g01876 218 Pfam Ring finger domain 172 215 IPR001841 -
Vian1g01876 218 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Vian1g01876 218 FunFam NEP1-interacting protein-like 1 133 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01876 Vian-Chr1 22230405 22232136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01876 19 218 C3H Transcription Factor Family AT5G66070 67.136 5.05e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01876 - - gmx:100816939 379.793