Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01875 ATGAGTCAGTCGGAAGAGGATTGGTGTGAAGAACTCACTAAAGCTATTGAGGCTAACTCCACTTTGCTTGATCAATGGTGGGTAGATGTCAAGTGTCCTGAAGAACTCTGCAACTTACAAGGCCAATCATTGCCTCAACAAAACTTGTCTGATTCTCCTCCAATACAACACAATGCAAACATGACTAACGTTGAGTCGGCTTTGATTCCACTACTCAACAATCCGCTGAACACGCAGAGCCAGAAATGTGATCCTCCGGTGCAACGTCGACAACGCAAGCCAAGGATAACATGGACGGTTAAAGAACACGAATTATTTCTTTGGGGCATAAAAAAGTATGGCATGAGTTGGAAAATGATTTCAAAAGAGATTGTTCGAACAAAGACACCAAGTCAATTGGCCAGTCATGCCCAAAAATATTTTGAACGTCAAAAAATACCGCCATCAGAAAGGAAAAGAAAAAGCATTCACGATATAACTCTTCCTCTTAGTGTTAATCCACGTCCTGCTCCTGCTCAAGTGACTGTTCCTTTTAATGTTCATCCACCTCGTGGTCAAGTAAATGGTTCTCTTAATGTTCAATCACCTCTTACTCCAGATTTCTCCATGCAAAATATTCATCCACTCGTCTACGCTCTTGCTCAAAATTCCTACATGCAAAATATTCTTCCTGCTCAAAATTCCTACATGCAAGATATTCTTCCTGCTCAAAATTCCTACATGCAAGATATTCTAACGGCTAATGTTGATCCACTTGCCTACACTCCGCTTCAAGATATCTACAAGCAAAATATTCAAGGACAACAGCAAATGCCACCTTTCAGTTCACCATATTACAACATTTATAATTGA 852 0.4026 MSQSEEDWCEELTKAIEANSTLLDQWWVDVKCPEELCNLQGQSLPQQNLSDSPPIQHNANMTNVESALIPLLNNPLNTQSQKCDPPVQRRQRKPRITWTVKEHELFLWGIKKYGMSWKMISKEIVRTKTPSQLASHAQKYFERQKIPPSERKRKSIHDITLPLSVNPRPAPAQVTVPFNVHPPRGQVNGSLNVQSPLTPDFSMQNIHPLVYALAQNSYMQNILPAQNSYMQDILPAQNSYMQDILTANVDPLAYTPLQDIYKQNIQGQQQMPPFSSPYYNIYN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01875 283 CDD SANT 97 141 IPR001005 -
Vian1g01875 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 145 IPR017930 -
Vian1g01875 283 SUPERFAMILY Homeodomain-like 91 145 IPR009057 -
Vian1g01875 283 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 52 227 IPR043363 -
Vian1g01875 283 Gene3D - 98 145 - -
Vian1g01875 283 ProSiteProfiles Myb-like domain profile. 90 141 IPR001005 -
Vian1g01875 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 144 IPR006447 GO:0003677
Vian1g01875 283 Pfam Myb-like DNA-binding domain 97 141 IPR001005 -
Vian1g01875 283 SMART sant 94 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01875 Vian-Chr1 22225715 22226696 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian1g01875 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01875 - - vun:114175456 229.95