Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01874 ATGTCGCTGGAGTTTATTGCAGGCATTTTCTCAGCAATGGTAGTGGCCTTACTCTACTGGCTCTTCAGGAAAAAGGTCATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGAAGTTAGGCTTCTTTCAGCTGTTAGGCACAGGAATGTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACAAGATGGAGCCAAAATACTGGTCTATGAATATGTTCCAAATGGTTCACTGCTTGAGTACATCATGGCTAGACCTGTGGTGGATTCCACTGATAAACAAAGTAATCAACATATCATTGACTGGGCAAGGCCAAGCATAGAGAAGGGCAGTGTTGAAGAAATCATAGATGCAAATCTACTATGTCAAAGTGAGCCCTGCAATATGGAAGTTATGCTGAAGATGGGGAAACTTGCTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACTCAGAAAATTTGA 474 0.4093 MSLEFIAGIFSAMVVALLYWLFRKKVIPFLKQRKTLKEVRLLSAVRHRNVIGLVGYCEEPEQDGAKILVYEYVPNGSLLEYIMARPVVDSTDKQSNQHIIDWARPSIEKGSVEEIIDANLLCQSEPCNMEVMLKMGKLALRCVVEEPKHRPTMTQKI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01874 157 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01874 157 Pfam Protein tyrosine and serine/threonine kinase 32 95 IPR001245 GO:0004672|GO:0006468
Vian1g01874 157 Gene3D Phosphorylase Kinase; domain 1 24 73 - -
Vian1g01874 157 PANTHER OS01G0253100 PROTEIN 32 81 - -
Vian1g01874 157 SUPERFAMILY Protein kinase-like (PK-like) 29 155 IPR011009 -
Vian1g01874 157 Gene3D Transferase(Phosphotransferase) domain 1 77 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01874 Vian-Chr1 22214139 22217159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01874 32 85 Receptor kinase-like Gene Family AT5G37450 48.148 3.00e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vian1g01874 PK_Tyr_Ser-Thr 6.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01874 - - var:108328541 154.451