Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01846 ATGGCGGAAGAAAGATTCACGGGCGTTGTGCAGTGGTTCAACAATGGAAAAGGCTTCGGCTTCATCAAGCCTGACGACGGCGGCGAGGATCTCTTCGTCCATCAGTCCTCCATCAGATCCGACGGTTACCGCACTCTCCTCGAGGGCGATCGCGTTGAGTTCGCTATCGCCACCGGCGACAACGACAAGACCAAGGCCGTTGACGTCACCGGAATCGACGGCGCCCCTCTCCAGCCCCGTGCCGCCTCCGGCAATCGTGGCTCTGGGTACGGATTTGGCTCCAGGCGGAATGGCGCGGGCGCTGGCGGTGCTGCGTGCTATCAGTGTGGCGATTTCGGCCATCTGGCTAGGGACTGCAACCGAAGCAGCAATTCCGGCGGCGGTGGTGGGTGCTTTGTTTGCGGCGGGTTTGGTCACCTCGCGAGGGACTGCGTGCGCGGAGGCAACGGCGGAGGAGGAGGAGGAGGCGGAGGCGGGGGCGGAGGCGGCTCTTGCTTTAGGTGTGGCGGATTTGGACACATGGCGAGGGATTGCGCGACTGCGAAGAGCGTCGGTGGTGGTGGTGGTAGTGGTGGTGGTTGTTTTCGGTGTGGGGAGGTAGGTCATTTGGCTAGGGATTGCGGCATTGAAGGAGGAAGGTACGGCGGTGGTAACAGTGGTGGTGGTGGTGCTGGCGGTGCTGGGAAGAGCACCTGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGTGTTGAGGCTTCCGTGTGA 753 0.6189 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGIDGAPLQPRAASGNRGSGYGFGSRRNGAGAGGAACYQCGDFGHLARDCNRSSNSGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGGGGGGGGSCFRCGGFGHMARDCATAKSVGGGGGSGGGCFRCGEVGHLARDCGIEGGRYGGGNSGGGGAGGAGKSTCFNCGKPGHFARECVEASV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01846 250 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Vian1g01846 250 Gene3D - 1 82 IPR012340 -
Vian1g01846 250 ProSiteProfiles Zinc finger CCHC-type profile. 232 245 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 SUPERFAMILY Retrovirus zinc finger-like domains 156 208 IPR036875 GO:0003676|GO:0008270
Vian1g01846 250 Gene3D - 160 187 - -
Vian1g01846 250 Gene3D - 226 249 - -
Vian1g01846 250 Gene3D - 189 215 - -
Vian1g01846 250 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Vian1g01846 250 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Vian1g01846 250 Gene3D - 83 150 - -
Vian1g01846 250 PRINTS Eggshell protein signature 98 109 - -
Vian1g01846 250 PRINTS Eggshell protein signature 158 173 - -
Vian1g01846 250 PRINTS Eggshell protein signature 183 193 - -
Vian1g01846 250 PRINTS Eggshell protein signature 215 233 - -
Vian1g01846 250 PANTHER COLD SHOCK DOMAIN PROTEIN 2 184 247 - -
Vian1g01846 250 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Vian1g01846 250 SUPERFAMILY Retrovirus zinc finger-like domains 99 146 IPR036875 GO:0003676|GO:0008270
Vian1g01846 250 ProSiteProfiles Zinc finger CCHC-type profile. 165 178 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 SUPERFAMILY Retrovirus zinc finger-like domains 215 245 IPR036875 GO:0003676|GO:0008270
Vian1g01846 250 SMART csp_8 7 72 IPR011129 GO:0003676
Vian1g01846 250 SMART c2hcfinal6 130 146 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 SMART c2hcfinal6 193 209 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 SMART c2hcfinal6 231 247 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 Pfam Zinc knuckle 231 245 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 Pfam Zinc knuckle 193 207 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 Pfam Zinc knuckle 130 144 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 ProSiteProfiles Zinc finger CCHC-type profile. 194 207 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 ProSiteProfiles Zinc finger CCHC-type profile. 131 144 IPR001878 GO:0003676|GO:0008270
Vian1g01846 250 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Vian1g01846 250 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Vian1g01846 250 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Vian1g01846 250 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01846 Vian-Chr1 21924643 21925395 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vian1g01846 CSD 1.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01846 K09250 - gmx:100806783 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01846 1 21924643 21925395 Vian1g01846 1 21924643 21925395 ECH