Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01841 ATGGAGGCTGAGGCGCAAATCTCTCACGATTCAAATACTCAATTTCAGCCAGAGCCTGTTGTCTCAGTTCAAAAAGGGGATCCTGGTGTTTCCTCATCTGTGGCAAATGCTGTTATCCCTCAGCAGCCAGCTACAAAAAAACCAACCAGGCAGTGGGCAGCGTGGACTCGACAAGAGGAGGAGAGTTTCTTCACTGCATTGCGACAAGTTGGGAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAAGATCAGGTCAGGCATTATTACTACCGGCTTGTGAGGCGGATGAACAAACTTCTTGGTCCAGGACTATGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTGGTGGTCTTTATTGGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATATTTTTAGAAGCCTTGGAGCATCAACTATTGAAGGACCGAAAGAAGAATGTAAGGAAGCGACCCCTGCAGGGGGGGAATTGTCTTCCTCCTGTGCCTACCACAGTCTCAAATCAGGGTAGAGCATCAGGAAACGAGGCCCGTGCAGTTAAACTGGTTCTTGTTGATAGTCAAAATATTTTAAAATTGGGACCTTCAAAATCATCAATGAAGCGCAATATAAACATGGGTGTTAGCCGGAGTAACACTAAGGGAGATTCAAATACCATGAAATCGACAAGGCAACGAAAGAAATCTGGCATGATTTCAACTGCTGCATATCGAAAATGGGAGAAGGCTGCAATTGCTGGCGTTTCTTTAGTTGCAGATGCTGCGGAGCATTTGGAGCGAGCTGCAACTGTTAGAGAGATTGAACAAGACCAGGAGAATCCAGGAGAAAAGTGTTCTGATCCAACTGATTATGTCCTGCCATCTTTACCCTCATGTCCGCAAAATCAATTTGTTGATAACAATGTGAATAGTATGAAACTTAAGCTCCAGTTATTCCCAATCGATGAACCCACTCGAAGAGCATTGGAAGTGGATAAGCATAATCCTCACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCCTCAATTTTGGAACATCTAAACCGTAAATGGGGTCATTCTAGCATAGCAGTTGGAGAATTAATGCTTTTTCCTTATGGTGTTCAAAGGGAAAATTTGTTTAATTATCAGAGATGGTCCCAGGAATCTACTCTGAGTGCAGCTGATATTTATGCAATGATTGGAAGTCCACCCATATTTCGTTTAAGGTATGGTTGGTTCTCCAATTCTGAACTTGGGTTATTAAATATGCAAGTGCCTGTAGCATCCGGCTCCATCCTCACACAATCCAAACGCAGTGTGTATAATTCTAAGGATCAGATTGTGAATTCAGTTTCATTTCCTACGGCAGCAGCTAATGCTCATTCCATGGAGCTCTCTGAAGGTTGCAGAATATCCATGAACAGAAACCATACTCTCATGACCTCCTCACCTGGTGTGCCTAACACTAGAGGCAACAGTGGTTACCTCAATACAAGCTCTGAGGAATCTCGTCATCCTACAGCCAACACATTGTGGCATGAAAAAGATGTCGGGGATGAAGCTGTAACTACGCAGTTAGAAGACTTGGAAGAGTTAAAATTAAGCAGTGGAACAGGACTGTCAGCTGGAGAATGGGCTGACAGTCTTACCAACATTAGTGTGGGGGATCTACTTTCAGGAGTGTCCCAGGATCTCGAAGATGACTGCATCAATCCTCCTATTGCTGATAATTGTCATGATGTTCAGCAAGTTCCTTTTAGTAGCGATTCTTTTGATGCTGCTATTGCTGCTCACATATCTAGACACCAAGACAAGATGGGACAATCCACGCTGGCAGCCCATATGTCTTCCATCTGGGATGCTGAAGAAACTTGTGATGCCTTTATATTTCGAAGAGATCACATTCTTCATGCTGATCGTCCTTGTTTGTCTCCAGTTGCTTCTTTAGAGTCCGAGAAAAAGGTTCCTGAAAGAAGCTTTGAGAAATTGGACGAGTTGTCACCGGAAAGAGAGGGGCTTGTGGATGATTTTGTTCAATCAGACCCTATGCCTATGGACAGTTCCGAGTCCGATGCAGATATCCAGGATCATTTAGGAAAGGATTTTAGTGCGCTAGCAGACATATATTGGCCTGATTCCTTGGGACCTTTGGATTTGGATATACCATCATCAACAAAGTACCATACCGAGGATCTAATTTTTAGTGACAGTCTTAGTGGACTGAATCGCTTGATAGCAAGCAGCCTGGATGCATTTCAGAATTGCTCCTTTTTTGGGTTTGACAAGAAGGAAGCACCGTCAACAGTTGAGGCTCGAGAATCTGCCACTCTCTCAGATTTTAAAATTGGAAGTGGTATCTGA 2397 0.433 MEAEAQISHDSNTQFQPEPVVSVQKGDPGVSSSVANAVIPQQPATKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALEHQLLKDRKKNVRKRPLQGGNCLPPVPTTVSNQGRASGNEARAVKLVLVDSQNILKLGPSKSSMKRNINMGVSRSNTKGDSNTMKSTRQRKKSGMISTAAYRKWEKAAIAGVSLVADAAEHLERAATVREIEQDQENPGEKCSDPTDYVLPSLPSCPQNQFVDNNVNSMKLKLQLFPIDEPTRRALEVDKHNPHLELTLSTRKKISSILEHLNRKWGHSSIAVGELMLFPYGVQRENLFNYQRWSQESTLSAADIYAMIGSPPIFRLRYGWFSNSELGLLNMQVPVASGSILTQSKRSVYNSKDQIVNSVSFPTAAANAHSMELSEGCRISMNRNHTLMTSSPGVPNTRGNSGYLNTSSEESRHPTANTLWHEKDVGDEAVTTQLEDLEELKLSSGTGLSAGEWADSLTNISVGDLLSGVSQDLEDDCINPPIADNCHDVQQVPFSSDSFDAAIAAHISRHQDKMGQSTLAAHMSSIWDAEETCDAFIFRRDHILHADRPCLSPVASLESEKKVPERSFEKLDELSPEREGLVDDFVQSDPMPMDSSESDADIQDHLGKDFSALADIYWPDSLGPLDLDIPSSTKYHTEDLIFSDSLSGLNRLIASSLDAFQNCSFFGFDKKEAPSTVEARESATLSDFKIGSGI 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01841 798 MobiDBLite consensus disorder prediction 212 247 - -
Vian1g01841 798 MobiDBLite consensus disorder prediction 1 49 - -
Vian1g01841 798 FunFam TSL-kinase interacting protein 1 16 104 - -
Vian1g01841 798 PANTHER CRAMPED PROTEIN 37 771 - -
Vian1g01841 798 Gene3D - 12 104 - -
Vian1g01841 798 SUPERFAMILY Homeodomain-like 46 101 IPR009057 -
Vian1g01841 798 FunFam TSL-kinase interacting protein 1 55 116 - -
Vian1g01841 798 Pfam Myb-like DNA-binding domain 54 96 IPR001005 -
Vian1g01841 798 SMART sant 51 99 IPR001005 -
Vian1g01841 798 MobiDBLite consensus disorder prediction 165 189 - -
Vian1g01841 798 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Vian1g01841 798 ProSiteProfiles SANT domain profile. 55 101 IPR017884 -
Vian1g01841 798 CDD SANT 54 97 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01841 Vian-Chr1 21861822 21867432 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian1g01841 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01841 - - gmx:100798411 1374.38