Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01826 ATGAAGCGAGCAAGGAAATCCAACCGGGTTTCGTGGGCCACTGGAGGGAACCTGTGTCAGGTGAAATTGTTTTTGTCTGACGATTTCCCCTCAAAAGTAGGCCAACATTCGCAAGATCATCTTCAAATAAAGACATCGATGCTAAATTCAAATTCCGCCATTATTGATCCTACCGATTTGCCCCCTGGGTTTGAAAGCAGTCATTTCCTAAAACAAACAAGGGTTGATTTGTCCTGCATTTCCCAGATAAAATGGGAATGTCCTCTGCCGTTTATTGTCAATCCTGATTGGCGTGTTGTAGCGGGCGAAGAAAGTAGGGAGAAAGAAAATCAGAAAGCGAGAGAAAATAGGGTGCTTGAAGCTGTTTATCCCCGTCTTTCAGCCATTCCTCCTAGTCCTTCTGTCTCTTTGGAAGTAGAAGAGGAAGATTATGATGATGACGTTACTCCCCTCATCCCTATCATTCCCATTGAAGAGGAAGAACCTATGGATATTTTACCCGAAGTGGCAGTAGCTGGGAACCCTTTCCCCAATGTGCAGCCGAATAACCCTCTGCAACATATATCTGCTGAAACTTCCATTCGTTCACCCTCAAACGCCTTTTATACTGATTCCTCGGATCCCTGTTCAGGGATCCCCTTGGGTGGGGGGGTATCTTTCGGTATGGAAGCTGATTTGGCAGCTTCTGTTGTTGCAACCATTATGAGGAGTTCTGAGCAGGGATCCCCGATTGATATGGATTTACTGGTTAAAATATTTAATGATCCCAAAATGCTCGACAAGTTGATTAATGAACATAGAACTGCAGCAACCACCACAAGTGCTTCCACAAGTACTGTGGACACCACTCCTGGTGTTAAGCCTGACACTCCAGTTCTGTTGTCTACATCTGATGTGAAAGCTTCGGGGGCTACACCTACAAGTGCAGTGGGTTCATTGCCTTTTGGTCTGAAAACTACATATCCATCAGTTCCAGTATTGAGTCCAACACCTGACAAGCCATCCACTCTGTCAGTGCCTGCAGTTCCATCAGTCTCACTGTTCTCTCCGGCTCATGATAATCCAGTTACTGCATCAGTTCCATTGTCTAGGCCTTTATCTGGTAAGCCAGGAACACCCTCAGTTTCATTGCTCACAAATACACCTGCATCTCATATACCCAGGTCTGTTAGCAAACAAATTCACCATGTGTCAAGTGGTATTTCCCCTGCATTAAATACTCAGCCTCACCAAGATACAGCTCTGGCATCTGGGCCAAAGCGAGTCGCTGCAATGGGCGGTGAATTAAGCACTGGTCCAGTGCCATCTCTTACCAGGAACTTGCATGCTGTTGTGAATCCGGTGCAATCCCCTGCCAGTACGTTGCCTTATAAACTAAGCACAGGTTCATCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACATGGGGCAGATAAGCAAGATATGCAGGACTCACACATAGGTATTCGTCATAGTAATCTCCAAGATATGAAACCGGTACATAACTTTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATATTTTAAAAGCTCAAAAGGGTGCCGAAATGGTTCCAATTGCCCTTATCAGCACGATGTTTCAGCTCAGTGGGGAGCTGGTAACATCTTAGGGGCACAGAGTGCAAAAAGATTGAAATCGGGACCATAG 1698 0.4517 MKRARKSNRVSWATGGNLCQVKLFLSDDFPSKVGQHSQDHLQIKTSMLNSNSAIIDPTDLPPGFESSHFLKQTRVDLSCISQIKWECPLPFIVNPDWRVVAGEESREKENQKARENRVLEAVYPRLSAIPPSPSVSLEVEEEDYDDDVTPLIPIIPIEEEEPMDILPEVAVAGNPFPNVQPNNPLQHISAETSIRSPSNAFYTDSSDPCSGIPLGGGVSFGMEADLAASVVATIMRSSEQGSPIDMDLLVKIFNDPKMLDKLINEHRTAATTTSASTSTVDTTPGVKPDTPVLLSTSDVKASGATPTSAVGSLPFGLKTTYPSVPVLSPTPDKPSTLSVPAVPSVSLFSPAHDNPVTASVPLSRPLSGKPGTPSVSLLTNTPASHIPRSVSKQIHHVSSGISPALNTQPHQDTALASGPKRVAAMGGELSTGPVPSLTRNLHAVVNPVQSPASTLPYKLSTGSSAFAVKDANYYKNLIRQHGADKQDMQDSHIGIRHSNLQDMKPVHNFKQGEVKHKIQKPCIYFKSSKGCRNGSNCPYQHDVSAQWGAGNILGAQSAKRLKSGP 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01826 565 MobiDBLite consensus disorder prediction 270 291 - -
Vian1g01826 565 ProSiteProfiles Zinc finger C3H1-type profile. 517 544 IPR000571 GO:0046872
Vian1g01826 565 MobiDBLite consensus disorder prediction 270 285 - -
Vian1g01826 565 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01826 Vian-Chr1 21639746 21646265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01826 82 173 Homeobox Transcription Factor Family AT4G02560 38.947 4.73e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian1g01826 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01826 - - pvu:PHAVU_003G260700g 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01826 1 21639746 21646265 Vian1g01826 1 21639746 21646265 ECH