Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01824 ATGGAGTCGTGTGTCCCACCGGGGTTTCGCTTCCACCCAACAGATGAAGAACTTGTGGGTTATTATCTCAGGAAAAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAAATCGACCTATATCGCATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAGTGGTATTTCTTTAGTCATAAAGATAAAAAATATCCAACTGGGACAAGAACCAACAGAGCTACAATGGCAGGATTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTTATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTCGAGAATGGACCTCCACAGGCAAAAGGATGGGTTGTGTGCAGAGCATTCAGGAAAAGAACGAACGGTCAAACGAAGACTATCGAAGGGTGGGATCGAAGGTACACATACGAGGAACAAGCATGTGGTGTCTACTCTTGGGTGGATCCTATCGACCTTATGTTAAGGAAACCACAGCGGAACAATATTTCGGCTGAAAATTTGTTGTACAAGAAAGAGACAAGGTTGATGCATGCAGAAGAAGCGATGCAGCTTCCTGAGCTAGAAAGTCCTTCCATGACAATAGTGAAAAAGCAAAGCTCGACATCAGTGTCCCTTATATCAGACAACATTAACAAGGAAGATGGTTCTGAGAAGGTGACCGATTGGAGGGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCATGAAATAGAAGGGATGTCAAGCTTTGCAGGTCACAGTGGGTCGGACATGGCATTGTTGCTACTCCAGAATACTAATGAAAGGAACAAGTTCAACCCTTTTCTAAGTGCAGCTTCATCAGACTGTGACATTGGGATATGTGTATTTGAAAAATGA 978 0.4366 MESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQAKGWVVCRAFRKRTNGQTKTIEGWDRRYTYEEQACGVYSWVDPIDLMLRKPQRNNISAENLLYKKETRLMHAEEAMQLPELESPSMTIVKKQSSTSVSLISDNINKEDGSEKVTDWRALDKFVASQLSQEERHEIEGMSSFAGHSGSDMALLLLQNTNERNKFNPFLSAASSDCDIGICVFEK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01824 325 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Vian1g01824 325 Pfam No apical meristem (NAM) protein 6 133 IPR003441 GO:0003677|GO:0006355
Vian1g01824 325 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Vian1g01824 325 ProSiteProfiles NAC domain profile. 5 154 IPR003441 GO:0003677|GO:0006355
Vian1g01824 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 236 - -
Vian1g01824 325 FunFam NAC domain-containing protein 14 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01824 Vian-Chr1 21608024 21610806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01824 1 324 NAC Transcription Factor Family AT2G18060 57.923 2.07e-141 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g01824 NAM 4.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01824 - - gmx:100803726 496.508