Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01813 ATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGAAAAGACATGGCCCTCAAACTCAGCCCCCAAGCGTTCCCGGAGGACCTTAACATGCAAAACGTCACCTCTTCCGACGACTTATTCGTCGACGACCTTCTCGACTTTTCGCTCCTCGAAAACGAAGAACCTGACCAACACAAACACAGCCACCATTCAACCTCCGTTTCCCCTCGCAACGACAACCACCATATGTACAATTGCAACCACTCCTTCAACGACAATTTCAATACCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGACTCTTTCTCCAAATACTCTCTTTCCTTCCCCGCAACCGTCACGCAGAGCCTCGCTGAGAAACCGCCGGAACCGGGAAACGCCGGTTTTACTTTCAAAACCCTCGTTCCGGCCAAGCCAAGGAGCAAGCGAACCAGAACCGGGGTTCGGGTTTGGCCGCTGAGGTCACCCTCGTCTTTCACCGACACGTCGTCTCCCGACAGCCCTTTGGTAATTTGCGCAGCCACGTCCAAAGACCACCACCCGGAGGACAAGAGGGCGAAGAAACGGGCGGCGTCGGACGGGGGAGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACACCTCAATGGCGAACAGGACCGCTCGGGGCGAAGACCTTGTGCAATGCCTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTGCCCGAATATAGACCCGCGTGTAGCCCTACATTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCAGAAAAAGGAAGCGGGGCCTGGACCGGACACCGGTTCGCCAGCGTCGGTTCCCGGTTTTTGA 882 0.5567 MECLEAVLKSSFRKDMALKLSPQAFPEDLNMQNVTSSDDLFVDDLLDFSLLENEEPDQHKHSHHSTSVSPRNDNHHMYNCNHSFNDNFNTELTLPAEEVADLEWVSHFIEDSFSKYSLSFPATVTQSLAEKPPEPGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFTDTSSPDSPLVICAATSKDHHPEDKRAKKRAASDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAGPGPDTGSPASVPGF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01813 293 Gene3D - 203 278 IPR013088 GO:0006355|GO:0008270
Vian1g01813 293 Pfam GATA zinc finger 211 245 IPR000679 GO:0006355|GO:0043565
Vian1g01813 293 MobiDBLite consensus disorder prediction 54 70 - -
Vian1g01813 293 SMART GATA_3 205 259 IPR000679 GO:0006355|GO:0043565
Vian1g01813 293 FunFam GATA transcription factor 200 284 - -
Vian1g01813 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 267 - -
Vian1g01813 293 CDD ZnF_GATA 210 258 IPR000679 GO:0006355|GO:0043565
Vian1g01813 293 MobiDBLite consensus disorder prediction 269 293 - -
Vian1g01813 293 MobiDBLite consensus disorder prediction 186 211 - -
Vian1g01813 293 PIRSF Txn_fac_GATA_plant 5 285 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vian1g01813 293 PANTHER GATA TRANSCRIPTION FACTOR 28 288 - -
Vian1g01813 293 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
Vian1g01813 293 MobiDBLite consensus disorder prediction 187 206 - -
Vian1g01813 293 MobiDBLite consensus disorder prediction 54 74 - -
Vian1g01813 293 ProSiteProfiles GATA-type zinc finger domain profile. 205 241 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01813 Vian-Chr1 21461192 21462143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01813 5 293 C2C2-Gata Transcription Factor Family AT5G66320 45.882 3.75e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian1g01813 GATA 3.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01813 - - pvu:PHAVU_003G258900g 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01813 1 21461192 21462143 Vian1g01813 1 21461192 21462143 ECH