Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01803 ATGGCGGGTTTGTTCTCATTAGGCGGAGGGAGAGGGAGTAACAACAACCAGCAAGACAACACTACCAACAACGAGATTCCTGCGGCTGAGACCCTATTCTGGTATAGCAAAACTGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCCCCGCATGCGCGGCCTCTCCTGCAGCGAGATCTTTACTCCTCCGGTGTGGGACCCAGTCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCTATGCGCGCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCAAAAAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGAGTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGCGAGCGTCAGCAACAGCTCGCTGTCTTGCAAGAGCAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACCGCTTGCACTCGTTTGCCCTCGTCAGTGATGAATGAGAGTGGGGAAATAAAGGAAAGGAAAAGAAAAGAAGAGAATCTTTCGCCAGGGAAATTCTCTGAAAAGATATCGAGGGACTGTCTGTTGCTTTTCTCTCAAACCATGGATCATTCAGCTACATGCCTAATGTTGTTTCTTTTTTTGTTTCTTAATGTGTTGAAAAAAAAAGAAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATCTGTTCAAAGGAATCCTTTATGACCATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGGTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCCGCTCCGGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 1110 0.5 MAGLFSLGGGRGSNNNQQDNTTNNEIPAAETLFWYSKTDDVSSYRGFELWNQQQEQHVMPPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAVLQEQQQQQRDLSKRPRDPTACTRLPSSVMNESGEIKERKRKEENLSPGKFSEKISRDCLLLFSQTMDHSATCLMLFLFLFLNVLKKKEGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHLFKGILYDHGPENSNNNNSNNNSNNYMAGETSAGVGGAQPLNLTASGVVTSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01803 369 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 353 IPR007818 GO:0003700|GO:0006355
Vian1g01803 369 NCBIfam LRP1 C-terminal domain 249 297 IPR006511 -
Vian1g01803 369 MobiDBLite consensus disorder prediction 9 23 - -
Vian1g01803 369 MobiDBLite consensus disorder prediction 143 203 - -
Vian1g01803 369 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Vian1g01803 369 MobiDBLite consensus disorder prediction 1 23 - -
Vian1g01803 369 MobiDBLite consensus disorder prediction 187 203 - -
Vian1g01803 369 Pfam Domain of unknown function (DUF702) 102 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01803 Vian-Chr1 21271989 21273555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01803 1 369 C2H2 Transcription Factor Family AT3G51060 40.189 2.37e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vian1g01803 DUF702 9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01803 - - lja:Lj0g3v0059359.1 342.813