Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01801 ATGTCAACGGAAGCGCCCAAGCGCCATAAGTGGCAGTGGGAGAACGCCACCGCGGGCGCTGCCGCCGGATTCGCCACCGTTGCCGTTATGTATCCCCTCGATGTTGTCCGCACTAGGTTCCAAGTTAACGATGGTCGAGTCTCTCATCTTCCCAGTTACAAGAACACCGCTCACGCCGTTTTCACCATTGCTCGCTCTGAGGGATTAAGAGGGTTATATGCAGGCTTTCTTCCTGGGACTCTCGGGTCCACTATTTCGTGGGGTTTATATTTCTTTTTCTATGATAAAGCCAAACAAAGATATGCAAGGAACGGGGAGGGGAAATTGAGCCCAGGTCTTCATCTTGCCTCAGCTGCTGAAGCAGGAGGTTTGGTTTGCCTGTGCACAAATCCTGTTTGGCTTATAAAGACAAGATTGCAGCTTCAAAGTCCGCTTCATCAGACGGAACCATACTCTGGGCTTTATGATGCATTTAGGACCATAACGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGCATTGTTCCTGGTCTATTTCTGCAGGTCTCTCATGGTGCTATTCAGTTCACAGCATACGAGGAGCTCCGTAAAGTTATTATTGATTTTAAGAGTAAGAGAAGTACATTCCATAATCACAATCCTGATAAATTGTTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTGGCTGCAATACTGCTAACCTATCCATTTCAGGTTATGCGGTCTCGCTTGCAGCAACGACCAAGTGGTGATGGGGTCCCAAGATATATGGATACTTGGCATGTTGTGAAAGAAACTGCACGAGTTCTAGGACTTGAAATTACCTTCTATGGGCAAAAGCTTGCAGGTCACTTCAACCTGTGGGAGAGATATTTCGTTTCATTGAACAGAATTACTTACAATTAA 918 0.4575 MSTEAPKRHKWQWENATAGAAAGFATVAVMYPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARSEGLRGLYAGFLPGTLGSTISWGLYFFFYDKAKQRYARNGEGKLSPGLHLASAAEAGGLVCLCTNPVWLIKTRLQLQSPLHQTEPYSGLYDAFRTITREEGFSALYRGIVPGLFLQVSHGAIQFTAYEELRKVIIDFKSKRSTFHNHNPDKLLNSVDYAVLGATSKLAAILLTYPFQVMRSRLQQRPSGDGVPRYMDTWHVVKETARVLGLEITFYGQKLAGHFNLWERYFVSLNRITYN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01801 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Vian1g01801 305 PRINTS Mitochondrial carrier protein signature 25 43 IPR002067 GO:0055085
Vian1g01801 305 PRINTS Mitochondrial carrier protein signature 73 91 IPR002067 GO:0055085
Vian1g01801 305 FunFam Folate transporter 1, chloroplastic 106 286 - -
Vian1g01801 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vian1g01801 305 Gene3D Mitochondrial carrier domain 2 104 IPR023395 -
Vian1g01801 305 Gene3D Mitochondrial carrier domain 105 286 IPR023395 -
Vian1g01801 305 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 281 IPR044712 GO:0006862|GO:0055085
Vian1g01801 305 SUPERFAMILY Mitochondrial carrier 11 276 IPR023395 -
Vian1g01801 305 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Vian1g01801 305 Pfam Mitochondrial carrier protein 221 280 IPR018108 -
Vian1g01801 305 Pfam Mitochondrial carrier protein 109 200 IPR018108 -
Vian1g01801 305 Pfam Mitochondrial carrier protein 11 103 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01801 Vian-Chr1 21211721 21218952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01801 32 251 Chloroplast and Mitochondria Gene Families AT2G47490 37.885 2.48e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01801 K15115 - gmx:100809599 484.182