Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01777 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAGTCCTTGCTCCTTTAAGGTGCATCGTGGAATGTGCACGGAACTCAGGAAATTAGTTGCTAGAATCCTGCGGATAATTCCACGTATAGAAGAAGCACGCCCTTGCGGAATGCAGGCTCTGTGTTTGCTCAACAGTGCAATTCATAAAGCCGCACAACTCCTGATATACTGCTCTGAATCTAGTCAACTCTACCTGGCAATGACAGGGGATTCCATACTCTCAAAATTTCAAAAGGCAAGACAATCGATAGTGAAAAACTTAGTCCAGATTCTGAATATGGTTCCCGTGATGTTGGCTGCAGAGATTTCTCGACTAATTGGTGATCTTGAGTGTGTTACATTTGTCCTCGACTCAGCTGAAGTAGCAGCAGGAAAGGTTTTGAAAGAATTGCTCCAGCAAGATTCTTCAACATCAGATAACGATTCAGTGGAAGAATCTGAAACAAAACATTTTCAGTTTGTAGCAGCAAGACTTAATATTACATCCTCATCGGCCATCTTAATAGAGAAACGATCTATTCAGAAGTTGCTAAAAAAGCTCAAACCAGATGGTCGGCCAAAAGAGATTGTCTTGAAAAATCTTTTGTATCTCCTGCTAAAGAACAAAAAATACATCACCGGGGAACAAATTGAGGTCTATTTGCAAAGTGAAGGACCAATCACAACTCAGAACTCAGTTCATGAGTCTCAAAGAATCCTTCATGTCAAGTCAGAACCATACTTGAACTATGATCAGCATAGAACTCAGGCCAATGAGTTGGACAGAGTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAGGTGGTTTGATGAGGGTAATACTATATGCCCAAAAACCAAAAAGAAACTGGATCATATGGCATTGACTCCAAATGTTGTCTTCAAGGACCTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCGAGTAGACAAGTGCCACATTTGCACCCATGGGATGCTTCCTCCAATTCCATTAAGAGTTTTGGAAGTTCTTTGTATGATTTAAACTTCCAAATGGATCTTAGTAACGTGTCACTTGGATCTTTAGACACCAGTTATAAATCAGATTCCTCTCATTCTAATGCCAATCATGGCTTAGATTTGATATTGAACACGAGCAGTGCCAATTCTCGGAGGCACCAATCTCGTGCACGGATTCATGACGTTGATCTGATGCCTTTGTCTAAACTCCATGAACGTCGATGGGAATCTCAATGCCAACTTATTGAAGATATGAGAATAGATTTCAAATGCAATAACCATATCTTTTGCTCTGTGCCATCTGAGAATTTCATTGACCCACTCACGAGATTTCTGAGCTCTGCCTGTGAGAGGCATGATGTAAAAGCTCTGAGATCTGGAACTATATTGCTGTTGGAATTTCTGAAGTGCTGCCGCAATGGTATGACCAATTTAACTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGACACAGAAGTGATTGGTGAAGCTCTTACCATAATGGAAGAGCTGAAAGGAAATTGGTATGAGAAAGCTAACATTGGAGCTTCCACTTTACTCACTTCTGTTTCAAAGATCCTTGATTTTGGTAGCAAGCAGTTCCAAGGAAAATCTATTAAAATAATGCTTAATTTTTCATCCAATAGTCAAATGTGTGCCTACATGATATCTCTCGGGTGCATCCCAAAATTACTGCAATTTTTTGGAGACAAAACCCTTTCGAGAGACTGTATACATATTTTGAAAAACCTTAGTGAGACTGAAGAGGGTAAGGTTACTGTGGTTGAAACAAAAGGATGCATATATTCTGTGGTTGAAATACTTGGGACTGGCAGTGACGAGGAAAAAGAACCGGCACTGCTTATTCTACTCTCTTTATGCTCTCAACGAGTGGAATACTGTCAGATGGTTATGGATGAGGGAATTATTCCTTCTCTTGTCGACATCTCCAATTCAGGAAGTGACATGGCAAAGGCTTATGCGCTTGAACTACTCCGTCTTTTAAAGGAAGACAGAGAGTTTGAGAATGAAGACTGTTATGAGCCAAAATTCAACGCCTCTCAAGAATCTACAAATCGCTATGAAGAAAAGAAATCATCAAAGAAACCTTCTATTTTGAAGAGATTGTCAATCTTCTCAAAATCAAGTTCAGTTGCACCAAATAACAAGAGATGA 2280 0.3991 MGTDGSELVETLPSPCSFKVHRGMCTELRKLVARILRIIPRIEEARPCGMQALCLLNSAIHKAAQLLIYCSESSQLYLAMTGDSILSKFQKARQSIVKNLVQILNMVPVMLAAEISRLIGDLECVTFVLDSAEVAAGKVLKELLQQDSSTSDNDSVEESETKHFQFVAARLNITSSSAILIEKRSIQKLLKKLKPDGRPKEIVLKNLLYLLLKNKKYITGEQIEVYLQSEGPITTQNSVHESQRILHVKSEPYLNYDQHRTQANELDRVTPPEEYTCPISLRLMYDPVVIASGETYERMWIQRWFDEGNTICPKTKKKLDHMALTPNVVFKDLILKWCETNGVSIPDPSRQVPHLHPWDASSNSIKSFGSSLYDLNFQMDLSNVSLGSLDTSYKSDSSHSNANHGLDLILNTSSANSRRHQSRARIHDVDLMPLSKLHERRWESQCQLIEDMRIDFKCNNHIFCSVPSENFIDPLTRFLSSACERHDVKALRSGTILLLEFLKCCRNGMTNLTEDTCIMLASLLDTEVIGEALTIMEELKGNWYEKANIGASTLLTSVSKILDFGSKQFQGKSIKIMLNFSSNSQMCAYMISLGCIPKLLQFFGDKTLSRDCIHILKNLSETEEGKVTVVETKGCIYSVVEILGTGSDEEKEPALLILLSLCSQRVEYCQMVMDEGIIPSLVDISNSGSDMAKAYALELLRLLKEDREFENEDCYEPKFNASQESTNRYEEKKSSKKPSILKRLSIFSKSSSVAPNNKR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01777 759 Gene3D - 457 714 IPR011989 -
Vian1g01777 759 SMART arm_5 665 705 IPR000225 GO:0005515
Vian1g01777 759 SMART arm_5 583 621 IPR000225 GO:0005515
Vian1g01777 759 SMART arm_5 622 663 IPR000225 GO:0005515
Vian1g01777 759 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Vian1g01777 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 344 IPR013083 -
Vian1g01777 759 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Vian1g01777 759 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Vian1g01777 759 SUPERFAMILY ARM repeat 442 708 IPR016024 -
Vian1g01777 759 PANTHER U BOX DOMAIN-CONTAINING 25 707 - -
Vian1g01777 759 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Vian1g01777 759 CDD RING-Ubox_PUB 272 321 IPR045210 -
Vian1g01777 759 SUPERFAMILY RING/U-box 262 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01777 Vian-Chr1 20872471 20876173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01777 15 728 U-box Gene Family AT4G36550 35.109 5.29e-125 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01777 - - gmx:100798951 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01777 1 20872471 20876173 Vian1g01777 1 20872471 20876173 ECH
Vian1g01777 1 20872471 20876173 Vian10g00711 10 6905390 6908920 ECH
Vian10g00711 10 6905390 6908920 Vian1g01777 1 20872471 20876173 PCT