Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01772 ATGGACATGAGAGAGCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCTCTCCAATAGAAATTCATCTTCCTCCAAGTTATCATCACCAATAGGGGAAAGAAGTGACCAACCTCCTCAATCTCACACGTTGATTTTCAGTGATCCACCCCAAACAACTTCACATCATCACCATCCCCTCAACCCCCCTAATTCTCTTCCACCAAACCCTCTTCAACTTCCACATCCTCACAGACCCAGAAGAGATCCAGATCCAACTCCTATTTCTCCTCCTGTCATAACCACCCCAAGAACACAACCACACTCAACACCAACTTTCACGACAACATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCCACCATGGGGGGTCATGTCACAGATGGGTGTGGGGAGTTTATGCCAAATGGAGAAGAAGGCACCCCAGAGTCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAATCATCACAACATGTTCTCAACTACCACCTCACTTACCCCAACAAAAACAACAGAAACATTGTCATTCATTCTCCGCAATCTCATCTTCAGTTACCTACACCCCACCTTCACGGGGTGGTGGCTACCCCTTCAGGTGGGCCGGTTCAGCCCGCGATGTTGGGCTTTGGGGGGACCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCGATGATGCAGGGCAATTGTTATCAGTGCCACCACTGTCATCATCCAAGAAGAGGTTCAGGACAAAGTTCTCACAGCAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAAGTGGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGCTCTCAGGTCGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCCATGAAGAAGAAGCAAATGTAA 963 0.4704 MDMREQDKVIEMPSTLGYNLSNRNSSSSKLSSPIGERSDQPPQSHTLIFSDPPQTTSHHHHPLNPPNSLPPNPLQLPHPHRPRRDPDPTPISPPVITTPRTQPHSTPTFTTTFRYRECLKNHAATMGGHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPEGESSQHVLNYHLTYPNKNNRNIVIHSPQSHLQLPTPHLHGVVATPSGGPVQPAMLGFGGTPAESSSEDLNMFQTDDAGQLLSVPPLSSSKKRFRTKFSQQQKDKMMEFAEKVGWKIQKQDEQELHQFCSQVGVKRQVFKVWMHNNKQAMKKKQM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01772 320 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 102 313 - -
Vian1g01772 320 FunFam Zinc-finger homeodomain protein 2 247 317 - -
Vian1g01772 320 MobiDBLite consensus disorder prediction 15 63 - -
Vian1g01772 320 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 114 164 IPR006456 -
Vian1g01772 320 NCBIfam homeobox domain, ZF-HD class 256 313 IPR006455 -
Vian1g01772 320 SUPERFAMILY Homeodomain-like 252 317 IPR009057 -
Vian1g01772 320 Pfam ZF-HD protein dimerisation region 113 165 IPR006456 -
Vian1g01772 320 Gene3D - 248 317 - -
Vian1g01772 320 MobiDBLite consensus disorder prediction 1 108 - -
Vian1g01772 320 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 115 164 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01772 Vian-Chr1 20830456 20831418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01772 90 320 ZF-HD Transcription Factor Family AT2G18350 47.863 3.83e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian1g01772 ZF-HD_dimer 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01772 - - ccaj:109810490 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01772 1 20830456 20831418 Vian1g01772 1 20830456 20831418 ECH
Vian1g01772 1 20830456 20831418 Vian10g00708 10 6860658 6861704 ECH
Vian10g00708 10 6860658 6861704 Vian1g01772 1 20830456 20831418 PCT