Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01768 ATGGCTCACCTCAACTGCCAACTGCCACCATTCAAGTTCTTCCACCTTCACACCTCAAATATCCCTTACAACACACCAATTTCTCCAACCATTTTCCTTCACATCACCACTATGCGTTCCATCAACGGTACCATATGTGTTGCATCAAGCACCCGAGCCTCTAACAGTAACGGAGGTCGCCACCGTGTGTACTACGGAGTGAGGCGTAGGAGCAGTGGAAAATGGGTTTCTGAAATCCGTGAGCCCAGAAAACCTAACATGATTTGGTTAGGGACATTTGCCACCCCTGAAATGGCGGTTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGAAAGGATGCCGAACTCAACTTCCCTGACTCCGCCTCTTCTTTTCCCGTTCCTTCTTCATCCGCTGCTTGTGACATTCAGATGGTTGCGGCCAGTGCTACAGCTGCCGTCGGAGCAGCTAATGATGCATTGAGTGAAGGAAGCCGAGGAGGGAATGTTTCGGTTTCAATGGCACAAGAGTTTCGGCTTCTCAACGTTGGGTGGAATTCCTTCTAA 549 0.4991 MAHLNCQLPPFKFFHLHTSNIPYNTPISPTIFLHITTMRSINGTICVASSTRASNSNGGRHRVYYGVRRRSSGKWVSEIREPRKPNMIWLGTFATPEMAVIAYDVAALALKGKDAELNFPDSASSFPVPSSSAACDIQMVAASATAAVGAANDALSEGSRGGNVSVSMAQEFRLLNVGWNSF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01768 182 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Vian1g01768 182 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Vian1g01768 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 51 154 - -
Vian1g01768 182 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Vian1g01768 182 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Vian1g01768 182 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Vian1g01768 182 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Vian1g01768 182 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Vian1g01768 182 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Vian1g01768 182 FunFam Ethylene-responsive transcription factor 2 62 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01768 Vian-Chr1 20763516 20764064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01768 54 131 AP2-EREBP Transcription Factor Family AT2G36450 75.949 3.86e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g01768 AP2 1.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01768 - - gmx:100799620 189.889