Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01767 ATGCATCGTTGTTGCGGGAACTCCCAGGGTCACGTGATGGGCACCTGTACATGCACCATGCTTCACACCGAAACTAACTCTTACTCCATCCTCTTTTCTATGCCCAACACCCACGCTCCCTATTATGATTACGAACACGAAGTCTACTCCTCCTACACGCCCTCTCCTTCTTCCGTCGACTGCACGCTCTCCCTCGGTACCCCTTCCACACGTTTCACCGAAGGCGAGGAGTTACGGAACCGCCACGAACCTCGCTCTTCCGTCACCAACTTCCGCTGGGACTTGCTGCAATCCAAACACACCACGCAATCTCAAACCAATAAATCAACCAGAGCAACCAATGCCGCCTCCAACAACGACCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCTACTCCCCTATGGAGAAACGGCCCTCGTGGCCCAAAGTCACTATGCAATGCTTGTGGGATCAGATATAAGAAGGAAGAGAGAAGAGCATCGGCTGCCGCCGCCACGTCTGCGGCGGTTCCCGGCAGCGTAATGGAATCATCTCGCTCGTACGGCAACCAAAGCAGTTCGTGGTACTCACACTCGCAGATGGGGAACGAGTTACGTTTCATGGAGGATTCCGACGATAGAGATTCGGAGAACGGCATTCCGTTCTTCTCTTGGAACCTTAACGTTCCAGACCGAACGAGCATGGTGCACGACTACACGAGATGA 714 0.5434 MHRCCGNSQGHVMGTCTCTMLHTETNSYSILFSMPNTHAPYYDYEHEVYSSYTPSPSSVDCTLSLGTPSTRFTEGEELRNRHEPRSSVTNFRWDLLQSKHTTQSQTNKSTRATNAASNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAATSAAVPGSVMESSRSYGNQSSSWYSHSQMGNELRFMEDSDDRDSENGIPFFSWNLNVPDRTSMVHDYTR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01767 237 Gene3D - 123 187 IPR013088 GO:0006355|GO:0008270
Vian1g01767 237 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Vian1g01767 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 163 - -
Vian1g01767 237 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Vian1g01767 237 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Vian1g01767 237 PANTHER GATA TRANSCRIPTION FACTOR 18 11 237 IPR044272 GO:0003700|GO:0009908
Vian1g01767 237 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Vian1g01767 237 SMART GATA_3 121 174 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01767 Vian-Chr1 20757848 20759007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01767 5 237 C2C2-Gata Transcription Factor Family AT3G50870 40.210 6.95e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian1g01767 GATA 6.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01767 - - gmx:100799154 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01767 1 20757848 20759007 Vian1g01767 1 20757848 20759007 ECH
Vian10g00706 10 6832120 6833020 Vian1g01767 1 20757848 20759007 PCT