Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01754 ATGAGAGTTCCCTCATCCCAACAGCCCAATACCCATTCTCCCAACCCAAACCTCCTCCTCCACACCACCACCACCACCAACACCACCTTCACCTACGAACCCACCTCCGTCCTCGACCTCTGCCGCAGCCCCAGTCCCGAAAAGAAACCAACTGTCCCCAAACCAGAACCCCAACACAACCTCACCACCACTACCACTACCACTACCAATACCAACAACAGCCTAGACCTGGACGATCATGTCTTGCCAAATTCCGATTGGTGGGAGTCCATCATGAAGGACCTAGCCTTACCCGAAGATTCTCCCACAACCCTCTCCAAGCCTAACAACATCAATCCATGCATCCCTGATTTTCCACCTTCTCATGACCCACCCTTTGATCACCCTCCCGACTTCACCTCTCTTTCAGAAATTTACAACCAAAACCTCCCCTACAACTACACCACCACCAACCCTTTGGACCATTCCTTTCACGACCTCAACCACCACCACCACAACCCCACCATCAACGTTAACAACTGGGACTTCATCGAAGAGCTTATCCGCGCCGCCGATTGCTTCGACAACAGTCACTTCCAACTGGCTCAAGCCATACTCGAACGCCTCAACAGCCGCCTCATTCGCTCACCCATGGCCAAACCGCTCCACCGAGCCGCGTTTCACTTCAAAGATGCTCTCCATTCCATTCTCTCCGGTTCCAACCGTGCCGCTTCCAACCGCCTCTCCTCCATGGCCGAGATTGTTCAAACCATCAAAACTTTCAAGGCCTTCTCGGGAATCTCTCCCATCCCAATGTTCTCTATCTTCACCACCAACCAGGCCTTGCTAGAAACCCTAAACGGATCCTCCTTTGTGCACGTCATCGATTTCGAAATCGGGCTCGGGATCCAATACGCCTCCCTCATGAAAGAGATCGCGGAGAAGGCCGCCGGCGCTTCGCTGCTCCTCCGCATCACGGCAGTCGTGCCAGAGGAGTACGCCGTGGAGAGCCGCCTCGTCCGCGAGAATCTCAACCAATTTGCGCATGACCTCGGAATCCGCGTTCAGGTGGACTTCGTCCCGCTTCGGACCTTCGAGGCGGTGTCATTCAAGGCGGTAAGGTTCGTCGACGGCGAGAAGATCGCGGTGCTGCTGTCGCCGGCGATCTTTTGCCGCCTCGGATCCGTCGGCGCGTTCCTCGCCGACGTGAGAAGGATGGCGCCCGGAGTGGTGGTGTTCGTGGACGGCGAGGGGTGGACGGAGGCTACCGCTGCGGCCTCTTTTCGGCGAGGCGTGGTGAACAGCTTGGAATTTTACTCCATGATGCTGGACTCGCTGGATGCGTCTGTGGCGGCCGGGGGAGGCGGCGAGTGGGTGAGGAGGATCGAGATGCTTCTTCTGCGGCCGAAGATCTTCGCAGCGGTGGAAAGCGCAAGGAGGAGGTCACCAGCGTGGAGGGAGGCATTTTACGGCGCCGGAATGAGGCCAGTGCAGCTGAGCCAATTCGCCGATTATCAAGCGGAGTGTTTGCTGGCGAAGGTGCAAATCAGAGGGTTCCACGTGGAAAAACGACATGCTGAATTGGTGCTCTGCTGGCATGAACGAGCGATGGTTTCCACGTCAGCTTGGCGGTGCTAG 1617 0.5683 MRVPSSQQPNTHSPNPNLLLHTTTTTNTTFTYEPTSVLDLCRSPSPEKKPTVPKPEPQHNLTTTTTTTTNTNNSLDLDDHVLPNSDWWESIMKDLALPEDSPTTLSKPNNINPCIPDFPPSHDPPFDHPPDFTSLSEIYNQNLPYNYTTTNPLDHSFHDLNHHHHNPTINVNNWDFIEELIRAADCFDNSHFQLAQAILERLNSRLIRSPMAKPLHRAAFHFKDALHSILSGSNRAASNRLSSMAEIVQTIKTFKAFSGISPIPMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAAGASLLLRITAVVPEEYAVESRLVRENLNQFAHDLGIRVQVDFVPLRTFEAVSFKAVRFVDGEKIAVLLSPAIFCRLGSVGAFLADVRRMAPGVVVFVDGEGWTEATAAASFRRGVVNSLEFYSMMLDSLDASVAAGGGGEWVRRIEMLLLRPKIFAAVESARRRSPAWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVEKRHAELVLCWHERAMVSTSAWRC 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01754 538 MobiDBLite consensus disorder prediction 38 77 - -
Vian1g01754 538 ProSiteProfiles GRAS family profile. 167 537 IPR005202 -
Vian1g01754 538 Pfam GRAS domain family 177 537 IPR005202 -
Vian1g01754 538 MobiDBLite consensus disorder prediction 56 77 - -
Vian1g01754 538 MobiDBLite consensus disorder prediction 1 22 - -
Vian1g01754 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 163 532 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01754 Vian-Chr1 20515634 20517250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01754 52 537 GRAS Transcription Factor Family AT4G36710 50.489 5.41e-160 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian1g01754 GRAS 4.7e-83 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01754 - - gmx:100785004 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01754 1 20515634 20517250 Vian1g01754 1 20515634 20517250 ECH
Vian10g00672 10 6488493 6490196 Vian1g01754 1 20515634 20517250 PCT