Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01750 ATGATGCTCTTCTCTCACCAATATCCTGGTGCATTCACTGAAGTAACTCCTCCTCAACAAGGCAAAGAAGCCAAGCCAAGACGCAAGAGAAATAAAAATGGTGCTGCGGCCACCCCCAAGAAGAGAAAGCTCACTGCCGAGCAAGTTAGTCTTCTCGAGAAAAATTTCTGCAGTGAACAGAAACTTGAATCTGAAAGGAAGGACCAACTCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTATGGTTTCAAAATCGACGTTTTCGTTGGAAGACCAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAAAATGTTCACGAAACCACCATGCTTCAGAAGTGCCACCTTGAGACTCGGGTATTAAAGCTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGTTACAAGAGCGTGATGAAAGAGCCGCAAGCAAAGATTTACTGGAAGCTGTGAACCCACCATTTCCTGAAGAGTTTAGGGTGGAAGAATATGATTATGGTGATGTTTTCTACATTCCGGAGACTCATTACATCAATGGAATGGAGTGGATTAATCTCTACATGTGA 579 0.4404 MMLFSHQYPGAFTEVTPPQQGKEAKPRRKRNKNGAAATPKKRKLTAEQVSLLEKNFCSEQKLESERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCHLETRVLKLEEQLLEAKKEIQQLQERDERAASKDLLEAVNPPFPEEFRVEEYDYGDVFYIPETHYINGMEWINLYM 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01750 192 CDD homeodomain 40 96 IPR001356 GO:0003677
Vian1g01750 192 FunFam homeobox-leucine zipper protein ATHB-40 34 103 - -
Vian1g01750 192 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 145 IPR045224 GO:0003700
Vian1g01750 192 SMART HOX_1 38 99 IPR001356 GO:0003677
Vian1g01750 192 MobiDBLite consensus disorder prediction 1 43 - -
Vian1g01750 192 SUPERFAMILY Homeodomain-like 40 103 IPR009057 -
Vian1g01750 192 Coils Coil 122 149 - -
Vian1g01750 192 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Vian1g01750 192 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Vian1g01750 192 Gene3D - 31 103 - -
Vian1g01750 192 Pfam Homeodomain 40 93 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01750 Vian-Chr1 20440844 20442424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01750 1 192 Homeobox Transcription Factor Family AT4G36740 46.890 1.71e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vian1g01750 Homeodomain 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01750 K09338 - gmx:100803948 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01750 1 20440844 20442424 Vian1g01750 1 20440844 20442424 ECH
Vian10g00670 10 6470572 6472358 Vian1g01750 1 20440844 20442424 PCT