Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01738 ATGGGTTGGTTTACTAAACTGCTCAAGGGATCCAACCGTAAATATTCAGGAGGAGGATATCATGGGAAATATGAAGAGGACAGATATTCAGACAATCATGATAATTCAGCGGATGATTTGACGGAAATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATCCGAAAGGGAAAAGAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTGACGATGAGGAAGACAATCGTGTTGGGGAAGTTCAGCAAGACGAAGATGACCATCATGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATCAGTTCTCCTCCTCGATCTGACACTGATTCTTTATTTCAACCTCTTGCAAACTTATTCCCACCTGTTTACAGAACTTGTGCTGGTTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGAGGTTTTTGGCATCCCGAATGTTTTTGTTGTCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCAATGTCTGGAAATGGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAAATGTGATGTTTGCAAAAACTTTATCCCACCAAACTCAGGTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGCCCATCGCATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACCCATGAATGCCAACCTCTCTATGTTGAGATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAACGAAGCCATGGAGGGAGAGAAGAATGTAAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTGTTCCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGACTGATCCGTCGATGCGATGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGCTATTGACTGGATCAATCCTGGCTCACGAAATGATGCATGCGTGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCAGCTCTGGGAATGAAGGTGCATTACCATCATCATCGTCTTCTGCTTCTTCCTCATCCTCCTCCTCACCTTCATCCTCTTCATCATCTAAGAAGGGCAAACGTTCTGACTTTGAGAAGAAACTTGGTGAATACTTCAAACACCAGATTGAGTCAGATAGTTCATCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGCCTTAAAAGGACCCTTGACCATATCCGAATGACTGGTAGTTTTCCATATTGA 1602 0.427 MGWFTKLLKGSNRKYSGGGYHGKYEEDRYSDNHDNSADDLTEIEKEEIDRAIALSLSEADPKGKRVIEDDSESEDDELCPLDDEEDNRVGEVQQDEDDHHAQIQQDEDKNLDEFQLEEDEQLARAIQESLSISSPPRSDTDSLFQPLANLFPPVYRTCAGCNAEIGSGRFLSCMGGFWHPECFCCHACKLPITDYEFSMSGNGRYHKSCYKELHHPKCDVCKNFIPPNSGGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNVNGHHHLPETRGLCLSEEQTVPTILRRPRIGAGYQLIDMITEPFRLIRRCDVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSSSGNEGALPSSSSSASSSSSSSPSSSSSSKKGKRSDFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01738 533 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Vian1g01738 533 CDD LIM_DA1 158 210 - -
Vian1g01738 533 SMART lim_4 157 209 IPR001781 -
Vian1g01738 533 FunFam Protein DA1-related 1 152 211 - -
Vian1g01738 533 Pfam LIM domain 158 212 IPR001781 -
Vian1g01738 533 SMART uim 117 136 IPR003903 -
Vian1g01738 533 SMART uim 43 62 IPR003903 -
Vian1g01738 533 PANTHER PROTEIN DA1-RELATED 2 3 533 IPR045218 -
Vian1g01738 533 MobiDBLite consensus disorder prediction 54 85 - -
Vian1g01738 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 245 - -
Vian1g01738 533 MobiDBLite consensus disorder prediction 450 475 - -
Vian1g01738 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Vian1g01738 533 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Vian1g01738 533 MobiDBLite consensus disorder prediction 450 480 - -
Vian1g01738 533 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Vian1g01738 533 MobiDBLite consensus disorder prediction 19 38 - -
Vian1g01738 533 Pfam Protein DA1 307 528 IPR022087 -
Vian1g01738 533 MobiDBLite consensus disorder prediction 1 38 - -
Vian1g01738 533 MobiDBLite consensus disorder prediction 70 85 - -
Vian1g01738 533 Gene3D Cysteine Rich Protein 155 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01738 Vian-Chr1 20257212 20260348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g01738 DA1-like 2.5e-102 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01738 - - gmx:100806605 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01738 1 20257212 20260348 Vian1g01738 1 20257212 20260348 ECH
Vian1g01738 1 20257212 20260348 Vian10g00647 10 6185959 6190563 ECH
Vian10g00647 10 6185959 6190563 Vian1g01738 1 20257212 20260348 PCT