Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01736 ATGGGAATAGCAACACCCTCTTCTTCCCTTCCTTCTATTATTTCTCACTCCAAGACATACCAGCAACACCATTCCAATTCTATGTCCCAAGATTACCACCACCAAGGAATCTTCAGCTTCCCGAATGGGTTCCAGAGATCGGCTACAACCATGAGTCACCAAGACCCTCACCAACAACAGCAGCACCAGCAGATTCGTAGGGACAAAGTAAGGGTGCAGGGCTTCGAGCCACAGCAAACTTTGGTTCCCATAGAAGAAGACGAACCGGGAAGCCTCCCGGTATACGAAACTGCAGGGATGTTATCAGAGATGTTCACTTTTCCTCCCGGTGCCACAGAATTATTAGAACAACAACAGCATCAGGCACAACAACAGCAATCAATGACGACGACTTTTCGTTCGTCGGCGAGAGCAGTAAGCAGTAGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGCTAACCGGGTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATAGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAACATAGTTCAGCATCAACATCATCATCATCACCACAACCACCATCATCACCATCAGATGTCAAGCATTAATGCAGACTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCTCCCCCTCCGCCTCCTTCTTCCACTCTCCACATGTTACTTCCCACGTTTCCTCCGGGCTCAGGAGGGTCTTTTGGTCAATTCACGTGGCTCCCTGACACTGCTCAAGATGGAGGAGGACCCAGTACGGTTGTGGAAGGCCCCGGTCACGGTCAAGGACTTTCCTTATCCTTGTCGTCCTCCTTAGAAGCTGCGAAAGCGGAGGAACTTAGGATGGGGGATAGTGGGTTTTTGTATTACAATCAAGCTAGTGGAGGACCCTCTTCCTATAAGAGTGCTCTCGGGGGTCATCACCACCAAGCATTGTTGGGACAAACCCATCAGGGGCATGTTGGCTTTGCGGCATCATCGTCCACATCATCCTTAGGTGTTGTCAACGCCTTGAGGAATTCAAAGTATATCAAGGCTGCTCAGGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAACTCTCAAACCCTAGCTCCAATCTTGGAGGTAGTGGCGGCGGCGGCGGCGGCGGTGCTTCCTCGTCTTTATCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGCATATCGGAGATACAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTTGACATGGTGATGGGTTTTGGTGCTGCTGTGCCATACACAGCACTTGCGCAGAAAGCAATGTCTCGTCACTTTAGGTGCCTAAAGGATGCCATAACAGCGCAACTGAAGCATAGTTGTGAGCTGTTGGGAGAGAAAGATGGGGCAGGGAACTCAGGGTTGACCAAAGGAGAGACCCCAAGGCTCAAGATGCTTGAACAAAGTTTGAGACAGCAAAGAGCGTTTCACCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCAAGGGTTCGGTTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCTGAAGGGGCAGAAGAGGAGAGAGAGAGAAACCAAAGCAGCAGCAATAACAGTGGCCACCAACTGGCACAAACCCCAACGCCCTCCACCACGGCATCGACAGCAACAGCGCCACCACCGCCTCCAACAACATCGACAGCGACGACACCACCAACAGCCAAAAGATCCGACACCGAAAGCGACCCTTCACTCGCTCCAATAAATAACAACAGGCCACAGGGAGCCTTCTCGGAAACACAACCCAACTCCTCAACCACCGCCACTGCCTCTGAGGTGGCGCCGCCCTCCGAGCTTCCCCGGTCGATGGGGGCTGATGACTCATGCCGGCACGGTAGCCTCGTTGCGGCGGAGTTTGGGACTGGTCCTGGCGCTTCTGACATTGGTTCGACACTGATTAGGTTTGGGACCACCGCAGGTGACGTGTCACTGACACTAGGGCTACGCCACTCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATTTAA 2334 0.5163 MGIATPSSSLPSIISHSKTYQQHHSNSMSQDYHHQGIFSFPNGFQRSATTMSHQDPHQQQQHQQIRRDKVRVQGFEPQQTLVPIEEDEPGSLPVYETAGMLSEMFTFPPGATELLEQQQHQAQQQQSMTTTFRSSARAVSSSGSEWYGNRQGMLTGLGPLGDSKNHHHSSVNSRDSSSSNIVQHQHHHHHHNHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQDGGGPSTVVEGPGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNQASGGPSSYKSALGGHHHQALLGQTHQGHVGFAASSSTSSLGVVNALRNSKYIKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGGGGGGASSSLSKDVPPLSAADRIEHQRRKVKLLTMLDEAYRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGNSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEEERERNQSSSNNSGHQLAQTPTPSTTASTATAPPPPPTTSTATTPPTAKRSDTESDPSLAPINNNRPQGAFSETQPNSSTTATASEVAPPSELPRSMGADDSCRHGSLVAAEFGTGPGASDIGSTLIRFGTTAGDVSLTLGLRHSGNMPEKTPFSVRDFGGI 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01736 777 Coils Coil 601 624 - -
Vian1g01736 777 ProSiteProfiles 'Homeobox' domain profile. 535 598 IPR001356 GO:0003677
Vian1g01736 777 MobiDBLite consensus disorder prediction 1 59 - -
Vian1g01736 777 CDD homeodomain 538 599 IPR001356 GO:0003677
Vian1g01736 777 MobiDBLite consensus disorder prediction 1 66 - -
Vian1g01736 777 FunFam BEL1-like homeodomain protein 4 541 603 - -
Vian1g01736 777 Pfam Homeobox KN domain 555 594 IPR008422 GO:0003677|GO:0006355
Vian1g01736 777 MobiDBLite consensus disorder prediction 643 657 - -
Vian1g01736 777 MobiDBLite consensus disorder prediction 117 202 - -
Vian1g01736 777 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 187 625 - -
Vian1g01736 777 MobiDBLite consensus disorder prediction 381 417 - -
Vian1g01736 777 Pfam Associated with HOX 351 485 IPR006563 -
Vian1g01736 777 Gene3D - 541 603 - -
Vian1g01736 777 SUPERFAMILY Homeodomain-like 540 605 IPR009057 -
Vian1g01736 777 MobiDBLite consensus disorder prediction 609 718 - -
Vian1g01736 777 SMART prehox3 345 486 IPR006563 -
Vian1g01736 777 MobiDBLite consensus disorder prediction 183 197 - -
Vian1g01736 777 MobiDBLite consensus disorder prediction 624 642 - -
Vian1g01736 777 SMART HOX_1 538 602 IPR001356 GO:0003677
Vian1g01736 777 MobiDBLite consensus disorder prediction 658 702 - -
Vian1g01736 777 MobiDBLite consensus disorder prediction 609 623 - -
Vian1g01736 777 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01736 Vian-Chr1 20178816 20185642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01736 345 777 Homeobox Transcription Factor Family AT2G23760 55.215 5.07e-145 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian1g01736 POX 4.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01736 - - gmx:100814959 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01736 1 20178816 20185642 Vian1g01736 1 20178816 20185642 ECH
Vian1g01736 1 20178816 20185642 Vian10g00646 10 6148261 6154512 ECH
Vian10g00646 10 6148261 6154512 Vian1g01736 1 20178816 20185642 PCT