Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01724 ATGTTCCACCGCAGCACAAAGTTCGCACTGCTTCTCTCCATCTTCGTTTTCTGTTCAACCATCGCCCGAACCAGCAGCAACTGCCAGCCCAGTTGCGGTTGCGGACAACATTCCCTAAAATACCCTTTTGGGTTCTGTTCTTACAGCAAAGTCAAACTAAACTGCAGCAGCGACAGTACGAAAGTCAAAATCGGCGAGTTCGAGGTTCAGAATATAACCTCTGATAGCATATTCGTGAGTCTTCCGGTGAAGTGCAACCGCAGCTTGGGAATCATAGACCCTCTTTTCGGTGTCAACTTTGCTCCTACGTTCAACAATAGCTTTCTGTTGCAGGGTTGCAAGTCCAAACAGAATGGCTGCGATACTACCCCATCGAGTTTCGTTGGCGAGCACGGCCCAGTGGAGGGGTGTGATTGGAAAAACAAAAGTGAAAATTTTATTTGCTTCAAGCGGTTGCCGCGTAATAATAGTTCGCGTGAATATGTGCTCCAGAGTGATTTGAAAGGAATTGGGTGTAGCTTCTTGTTTTCTGCCATTGCTTATGATAAGAGTAAAGGAAAAGAGCTTTCGCTACAATTACAGATGCTTGAGTTGGGGTGGTGGCTCAAAGGGCCCTGTAATTGCTCCAACAATGCATCCTGCACGGTGGTCAAGCTTGCCACAGGAGATCCAGGCTACCGGTGCCGGTGCCATGAAGGTTTCGTAGGCGACGGTTTCAAAGACGGCGATGGCTGCCGGAGTACCTTTTCAGCAGTTCCTCAATGCAAACCTTCAACACTATGGCCTGGCAGATGTAGAAAAGCAATCAAAATCGGTGTCCTTGTTGGAGGGGTGATAATTGTGGCTACTCTGGTGGTTGCTCTGTCTCTTCTATGTTACTTTACTAGGCGTCGTTCCTCTTGGCTGAGAAAACAAGTTACAGTAAAGCGCTTATTACGAGAAGCTGCGGGCGACTCTATTGTTCCTCTATATCCGTACAAAGAAATAGAAAGAGCCACAAGTTTTTTCGATGAAAAACATAGGCTGGGAACTGGGGCATTTGGCACAGTTTATGCTGGACACCTTCACAACGATGAGTGCGTTGCTATAAAAAAGATTAAGTATAGAGACACCAATAGTGTTGACCAAGTCATAAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTGCGCCTCCTAGGTTGCTGCATAGAAGGGGGAGAACAGATACTTGTGTATGAGTATATGCCCAATGGAACACTATCTGAACATTTGCAAAGGGAGAGGGGCGGAATACTTTCATGGACAACAAGACTAACCATTGCTACAGAAACTGCTAATGCTATAGCATATCTCCATTCTGCCATTAACCCTCCGATATATCACAGAGACATAAAATCCAGCAACATACTCTTGGACTACAGTTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGAATGTCAGAAACATCACATATCTCAACCGCCCCACAAGGGACCCCGGGCTATGTTGATCCCCAATACCACCAGAACTTTCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAAGTGCAATGAAAGTGGTTGATTTTTCGCGACCTACAAGTGAAATCAATTTGGCTGCACTTGCAGTTGAAAGGATTAGGAGGGGTTGTCTCGATGATATCATTGATCCCTTCCTTGAGCCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACCATGATTGAAGTGGCTGAGGAGCTTGAAGTTATCAGACGCAGTGAGTGGGAAGCTTTGGAGGAAACCATATGCACAGCTTCATCGGTTGGGTCCGTTTGTTCATCGCCTCGAATAGGAAGAGAGAATTCATTGGTTGGTGTTAGTTTTGAGAGAGTTGCAGGGCAAGGGAGTGAGACATTGATTGTTCCACCCAAGAGTGAAATGTTTTTGCAATCAGTGAAGGAAGTGAAGGACAACTCTCCTGTATCTGTGCATGATGCTTGGCTCAGTGGAACTAGCTCACCTTCTACAAATTGCTAG 2100 0.4552 MFHRSTKFALLLSIFVFCSTIARTSSNCQPSCGCGQHSLKYPFGFCSYSKVKLNCSSDSTKVKIGEFEVQNITSDSIFVSLPVKCNRSLGIIDPLFGVNFAPTFNNSFLLQGCKSKQNGCDTTPSSFVGEHGPVEGCDWKNKSENFICFKRLPRNNSSREYVLQSDLKGIGCSFLFSAIAYDKSKGKELSLQLQMLELGWWLKGPCNCSNNASCTVVKLATGDPGYRCRCHEGFVGDGFKDGDGCRSTFSAVPQCKPSTLWPGRCRKAIKIGVLVGGVIIVATLVVALSLLCYFTRRRSSWLRKQVTVKRLLREAAGDSIVPLYPYKEIERATSFFDEKHRLGTGAFGTVYAGHLHNDECVAIKKIKYRDTNSVDQVINEIKLLSSVSHPNLVRLLGCCIEGGEQILVYEYMPNGTLSEHLQRERGGILSWTTRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMSETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIISAMKVVDFSRPTSEINLAALAVERIRRGCLDDIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELEVIRRSEWEALEETICTASSVGSVCSSPRIGRENSLVGVSFERVAGQGSETLIVPPKSEMFLQSVKEVKDNSPVSVHDAWLSGTSSPSTNC 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01724 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vian1g01724 699 SMART serkin_6 336 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01724 699 SUPERFAMILY Protein kinase-like (PK-like) 319 610 IPR011009 -
Vian1g01724 699 FunFam Wall-associated receptor kinase-like 20 412 621 - -
Vian1g01724 699 Gene3D Phosphorylase Kinase; domain 1 298 411 - -
Vian1g01724 699 ProSiteProfiles Protein kinase domain profile. 336 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01724 699 ProSitePatterns Protein kinases ATP-binding region signature. 342 365 IPR017441 GO:0005524
Vian1g01724 699 Pfam Protein kinase domain 337 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01724 699 Gene3D Laminin 206 240 - -
Vian1g01724 699 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 692 IPR044652 GO:0004672
Vian1g01724 699 Gene3D Transferase(Phosphotransferase) domain 1 412 629 - -
Vian1g01724 699 FunFam Wall-associated receptor kinase-like 14 303 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01724 Vian-Chr1 20017368 20021087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01724 1 698 Receptor kinase-like Gene Family AT2G23450 53.409 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian1g01724 Pkinase 7.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01724 - - gmx:100810861 1062.37