Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01697 ATGGCACTAAGTGGTAGGCATTGCTGTATCATCTTCATCGTTTTTGAATTAGCATCCTTCTTTCCTCTCTCTTATGCCGCTTCTGACTTAGAATTGCTCCTCAAAATGAAAGAAAGCTTAGAAAACTACGGTTCCTCCTTGGACTCCTGGAACTCTACCACTCCTCCTTGCACCGATGGCCATGCCAACTGGCGTGGCATTCTTTGCTACGAAGGAAAAGTGTGGGGCGTGAAGCTTGAGAACATGGGGCTCCAAGGCCTCATTGACATCGATTCTTTAAAGGCCTTGCCTTACCTAAGAACCTTGAGTTTCATGAACAATAGTTTGGAGGGTCCATGGCCAGAAATTCACAACTTGGTTGGTCTCAAGTCTATTTACCTTTCCAATAACAAGTTTTCTGGGGAGATTCCTTATAGAGCCTTCGAGGGGTTGAAGTGGTTGAAGAAAGTTTATCTGTCCAACAACCAGTTCTCCGGTTACGTTCCAACTTCGCTCACGGTGTTGCCGAGACTCATAGAGCTCAGGTTGGACGGGAATGAGTTCACTGGTGCCATTCCCCGTTTTCATCCCCTCAACAGATTGAGATTGTTTAATGTTGCTAATAATCAGTTGCAGGGTCAGATTCCTTCCACCGTTAATAGAATGCCGGCTTCTTCCTTTGCTGTGGTGGTTGTTTGCCTGGCGGTGCTTGTGATTGGAATAGTAGTGCTCATGATTCACAAAAAACAGAACGGAGCTTGTGCAGCGAAATTGGGGAATCCACCCAGCAGCATCGGCAAAGGGCGTTTGAGGGACGTGGGTGATGAGAGCCGCAGGTCCGCAGGGTCAATGAGCTCCACAGACACCAGAAAAGCTGAACACTTGAGACTCTCTTTTCTGAGAGATGACAGAGAAATGTTTGACCTGCAAGAGTTGCTGAGAGCTTCTGCTGAGATTTTGGGAAGTGGCTGCTTCAGCTCTTCATACAAGGCTGCTTTGGTGAATGGGCCAACAATCGTGGTGAAGAGGTTCAAGCAGATGAACAATGTGGGGAAGGAAGAGTTCCAAGAGCACATGAGAAGGCTAGGGAGGTTGAGTCATCCTAATTTGCTTCCTCCAGTGGCTTACTATTACAGAAGGGAAGAGAAGCTCGTGGTCACAGACTATGTTCGCAATGGAAGTCTCGCTGTTCGCCTTCACGGGCACCAATCCCTGGGAGAACCAAGCCTTGAATGGCCAATCCGGTTGAAGATTGTGAAAGGCATAGCAAAAGGTCTTGAATATCTATACAGGGACATGCCAAGCCTAATTGCCCCACATGGAAATCTGAAGTCTTCTAATGTTCTGTTGAGCGAATCTTTTGAGCCTCTTCTGACAGACTATGGCCTAGTTCCAATGATAAACCAGGAATTGGCTCAGGACATCATGGTGATATACAAGTCTCCTGAGTATTTGCAACAAGGAAGGATCACAAAGAAGACTGATGTGTGGTGTCTTGGAATACTGATTCTGGAGATCTTAACTGGGAAGTTCCCAGCAAACTTTTTGCAAAAGGGTAAAGGGAGTGAGGTGAGTTTGGCAAGTTGGGTGGATTCAGTGGTGCCAGAAGAGTGGACCAATGCTGTGTTCGATCAAGAAATGGGGACAACTAAGAACAGTGAAGGAGAGATGGAGAAGCTTTTGAAGATTGCTTTGAATTGTTGTGAGGCGGATGTGGATAAGAGGTGGGATTTAAAGGAAGCTGTAGAGAAGATTCTTGAGGTGAAGGAAAGGGACGGTGATCAAGAAATTTTTTTAACTTCTTATGCTAGTGATGCAGAATTGATTTCCTCAACTTGA 1818 0.4604 MALSGRHCCIIFIVFELASFFPLSYAASDLELLLKMKESLENYGSSLDSWNSTTPPCTDGHANWRGILCYEGKVWGVKLENMGLQGLIDIDSLKALPYLRTLSFMNNSLEGPWPEIHNLVGLKSIYLSNNKFSGEIPYRAFEGLKWLKKVYLSNNQFSGYVPTSLTVLPRLIELRLDGNEFTGAIPRFHPLNRLRLFNVANNQLQGQIPSTVNRMPASSFAVVVVCLAVLVIGIVVLMIHKKQNGACAAKLGNPPSSIGKGRLRDVGDESRRSAGSMSSTDTRKAEHLRLSFLRDDREMFDLQELLRASAEILGSGCFSSSYKAALVNGPTIVVKRFKQMNNVGKEEFQEHMRRLGRLSHPNLLPPVAYYYRREEKLVVTDYVRNGSLAVRLHGHQSLGEPSLEWPIRLKIVKGIAKGLEYLYRDMPSLIAPHGNLKSSNVLLSESFEPLLTDYGLVPMINQELAQDIMVIYKSPEYLQQGRITKKTDVWCLGILILEILTGKFPANFLQKGKGSEVSLASWVDSVVPEEWTNAVFDQEMGTTKNSEGEMEKLLKIALNCCEADVDKRWDLKEAVEKILEVKERDGDQEIFLTSYASDAELISST 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01697 605 SUPERFAMILY Protein kinase-like (PK-like) 311 579 IPR011009 -
Vian1g01697 605 Pfam Protein tyrosine and serine/threonine kinase 311 577 IPR001245 GO:0004672|GO:0006468
Vian1g01697 605 Gene3D Phosphorylase Kinase; domain 1 272 382 - -
Vian1g01697 605 SUPERFAMILY L domain-like 54 216 - -
Vian1g01697 605 FunFam Pollen receptor-like kinase 1 383 591 - -
Vian1g01697 605 Gene3D Ribonuclease Inhibitor 26 224 IPR032675 -
Vian1g01697 605 Gene3D Transferase(Phosphotransferase) domain 1 383 591 - -
Vian1g01697 605 FunFam Nuclear pore complex protein NUP107 26 187 - -
Vian1g01697 605 ProSiteProfiles Protein kinase domain profile. 307 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g01697 605 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 585 IPR046959 -
Vian1g01697 605 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Vian1g01697 605 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Vian1g01697 605 MobiDBLite consensus disorder prediction 258 281 - -
Vian1g01697 605 FunFam pollen receptor-like kinase 1 276 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01697 Vian-Chr1 19582344 19584713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01697 8 604 Receptor kinase-like Gene Family AT5G35390 51.227 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian1g01697 PK_Tyr_Ser-Thr 6.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01697 - - gmx:100804368 930.243